| Definition | Bacillus subtilis subsp. subtilis str. 168 chromosome, complete genome. |
|---|---|
| Accession | NC_000964 |
| Length | 4,215,606 |
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The map label for this gene is licR
Identifier: 16080911
GI number: 16080911
Start: 3962003
End: 3963928
Strand: Reverse
Name: licR
Synonym: BSU38600
Alternate gene names: 16080911
Gene position: 3963928-3962003 (Counterclockwise)
Preceding gene: 16080912
Following gene: 16080910
Centisome position: 94.03
GC content: 45.69
Gene sequence:
>1926_bases ATGCTTCATGGGCGACTACGTGATATTCTGCGCTTGCTGATGGCGGCTGAAGCCCCGGTGACAAGTTCGTTTTTTGCCGC GCAATTAAACGTAACGACGCGGACAGTCCGCAATGATATAAAGGAACTTCAAGGTGTGCTAAGCGGCCACGGTGCCTTTG TACAATCTGTAAGAGGCTCCGGCTACAAGCTCCGCATTGATGACGAGCAAGTATTCAGAACACTGCTGCAAGATGAATTT CAGCAAAAAAAGGGCCTGCCGGTATTGCCGGAGGAGAGAATGGCCTATCTTATGAAACGTCTGCTGCTGGCGGACCATTA TCTCAAGCTCGATGAACTTGCTGAAGAACTATTTATCTCAAAATCTACACTCCAAACGGATTTAAAGGAAGTAAAGAAAC GTCTGCTGCCTTACCGCATCGTCATGGAAACACGTCCGAATTACGGCTTCAAGCTGCGCGGGGACGAGGTGCAGATGAGG TACTGCATGGCGGAGTACATTGTTGATGAAAGAGAAACGGAGATAGATGTTTTAAATGAAAAGGCTGATATTTTGCCAAA AGAAGAAATTGAGATCATCCGTTCCGCCATCTTGAAAAAAATGAAAAACGACCGCATCCCTCTGTCCAACATGGGACTGA ATAACCTCATTATCCATATCGCTATCGCCTGTAAACGGATCAGAACGGAAAACTATGTTTCTCTTTTCCCGAAAGATATG GATCATATCCTGCATCAAAAGGAGTACCAGGCTGCAGAAGCCATCGTAAAAGAGCTGGAATCAAAGCTTTCCGTTACGTT TCCGAAAGACGAGACGGCCTACATCACCATGCATCTCCTTGGCACAAAACGAATGACACAATCACAATGCGGAGAGGACA CATTTTCAATAGAAGAGGAAACCGATCAGCTGACACTTGCCATGATCAAAGCTGTTGATCGTGAACTGAAGCTTGGCATC CTGCATGACAAAGAGCTGAAAATCGGCTTGGCACTGCATATGAAGCCGGCGATCAGCCGCAACCGATACGGCATGAATCT TCGAAATCCGATGCTGGCAGCGATCAAGGAACATTATCCACTCGCTTTTGAAGCCGGGATCATTGCCGGAATCGTGATAA AGGAACAAACGGGTATTGAGATTCATGAAAACGAAATTGGATATTTGGCTCTCCACTTTGGCGCCGCGATTGAACGAAAA AAAACAGAAAGCCCGCCGAAACGCTGTATCATTGTATGCGCATCGGGAGCCGGAAGCGCCCAGCTTCTGCGCGAAAAACT GCGTTCCCATTTCGGCAAGCGGCTCGATATTCTTGGAACGGCTGAGTATTATAGTCTTGATCAAATGTCCTACGAATCAA TTGATTTTGTCATCAGCACCATTCCGATTAAAAAAGAGCTCCCTGTACCAGTACTGAAGGTTAACACCATCTTAGGCGGA ACTGACTTTACAAAAATAGAATCTATTCTGAGTGATGAAAAGGAAAAAGCCAATCGCTACCTAAAAAAAGAACTCGTTTT TTTTCAGGAGGATCTGCGCTCAAAAGAAGAAGTGATTCAATTTTTAGGGCAGAAAGTGGTCGAATGCGGCTTTGCCGATG AAGAAATCATAGATTCCATTTTTGAAAGAGAAGACATGTCGCCAACGTGTTTTGGCAATCTTGTTGCCATCCCGCACCCG CTTGTTCCGCAGACGAAAACAACGTTTTGGGCCGTTTGTACGCTCAAAAAACCGATCGATTGGGAGAGTCAGCGAGTTCA ATTTGTCTGTCTGCTTTGTGTCGAAAAGGAGAACAAAGCGGATTTACAAAGCATGTATAAACTGCTTGGCAGCATTTTGG ATGACCCGGCGGCGATGAACCAGCTGATCAAATGCCGTTCATATCAAGAGCTTTCGGATGTGTTTGACCAAAAAATGCTG AGCTGA
Upstream 100 bases:
>100_bases ATTCTCTCCATTATAGAATTTATATACATTTCGCATCCCTTCATCATCCTTTCTGCCTATTCACTGAATCCCTGCATCTA CTAGTTAGGAGGTTTTTCTC
Downstream 100 bases:
>100_bases CAGCCTGTATATACCTTTTTTCCGTTGCCTGCGGAAAAACCCTGAGTGTTTATGAAAGCGATTTCATAATATGATGATAG CAACAGCAGGACATTACAAA
Product: transcriptional activator of the lichenan operon
Products: NA
Alternate protein names: Putative phosphotransferase enzyme IIB component; Putative PTS system EIIB component; Putative phosphotransferase enzyme IIA component; Putative PTS system EIIA component
Number of amino acids: Translated: 641; Mature: 641
Protein sequence:
>641_residues MLHGRLRDILRLLMAAEAPVTSSFFAAQLNVTTRTVRNDIKELQGVLSGHGAFVQSVRGSGYKLRIDDEQVFRTLLQDEF QQKKGLPVLPEERMAYLMKRLLLADHYLKLDELAEELFISKSTLQTDLKEVKKRLLPYRIVMETRPNYGFKLRGDEVQMR YCMAEYIVDERETEIDVLNEKADILPKEEIEIIRSAILKKMKNDRIPLSNMGLNNLIIHIAIACKRIRTENYVSLFPKDM DHILHQKEYQAAEAIVKELESKLSVTFPKDETAYITMHLLGTKRMTQSQCGEDTFSIEEETDQLTLAMIKAVDRELKLGI LHDKELKIGLALHMKPAISRNRYGMNLRNPMLAAIKEHYPLAFEAGIIAGIVIKEQTGIEIHENEIGYLALHFGAAIERK KTESPPKRCIIVCASGAGSAQLLREKLRSHFGKRLDILGTAEYYSLDQMSYESIDFVISTIPIKKELPVPVLKVNTILGG TDFTKIESILSDEKEKANRYLKKELVFFQEDLRSKEEVIQFLGQKVVECGFADEEIIDSIFEREDMSPTCFGNLVAIPHP LVPQTKTTFWAVCTLKKPIDWESQRVQFVCLLCVEKENKADLQSMYKLLGSILDDPAAMNQLIKCRSYQELSDVFDQKML S
Sequences:
>Translated_641_residues MLHGRLRDILRLLMAAEAPVTSSFFAAQLNVTTRTVRNDIKELQGVLSGHGAFVQSVRGSGYKLRIDDEQVFRTLLQDEF QQKKGLPVLPEERMAYLMKRLLLADHYLKLDELAEELFISKSTLQTDLKEVKKRLLPYRIVMETRPNYGFKLRGDEVQMR YCMAEYIVDERETEIDVLNEKADILPKEEIEIIRSAILKKMKNDRIPLSNMGLNNLIIHIAIACKRIRTENYVSLFPKDM DHILHQKEYQAAEAIVKELESKLSVTFPKDETAYITMHLLGTKRMTQSQCGEDTFSIEEETDQLTLAMIKAVDRELKLGI LHDKELKIGLALHMKPAISRNRYGMNLRNPMLAAIKEHYPLAFEAGIIAGIVIKEQTGIEIHENEIGYLALHFGAAIERK KTESPPKRCIIVCASGAGSAQLLREKLRSHFGKRLDILGTAEYYSLDQMSYESIDFVISTIPIKKELPVPVLKVNTILGG TDFTKIESILSDEKEKANRYLKKELVFFQEDLRSKEEVIQFLGQKVVECGFADEEIIDSIFEREDMSPTCFGNLVAIPHP LVPQTKTTFWAVCTLKKPIDWESQRVQFVCLLCVEKENKADLQSMYKLLGSILDDPAAMNQLIKCRSYQELSDVFDQKML S >Mature_641_residues MLHGRLRDILRLLMAAEAPVTSSFFAAQLNVTTRTVRNDIKELQGVLSGHGAFVQSVRGSGYKLRIDDEQVFRTLLQDEF QQKKGLPVLPEERMAYLMKRLLLADHYLKLDELAEELFISKSTLQTDLKEVKKRLLPYRIVMETRPNYGFKLRGDEVQMR YCMAEYIVDERETEIDVLNEKADILPKEEIEIIRSAILKKMKNDRIPLSNMGLNNLIIHIAIACKRIRTENYVSLFPKDM DHILHQKEYQAAEAIVKELESKLSVTFPKDETAYITMHLLGTKRMTQSQCGEDTFSIEEETDQLTLAMIKAVDRELKLGI LHDKELKIGLALHMKPAISRNRYGMNLRNPMLAAIKEHYPLAFEAGIIAGIVIKEQTGIEIHENEIGYLALHFGAAIERK KTESPPKRCIIVCASGAGSAQLLREKLRSHFGKRLDILGTAEYYSLDQMSYESIDFVISTIPIKKELPVPVLKVNTILGG TDFTKIESILSDEKEKANRYLKKELVFFQEDLRSKEEVIQFLGQKVVECGFADEEIIDSIFEREDMSPTCFGNLVAIPHP LVPQTKTTFWAVCTLKKPIDWESQRVQFVCLLCVEKENKADLQSMYKLLGSILDDPAAMNQLIKCRSYQELSDVFDQKML S
Specific function: Positive regulator of the licABCH operon
COG id: COG3711
COG function: function code K; Transcriptional antiterminator
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PTS EIIB type-2 domain
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): LICR_BACSU (P46321)
Other databases:
- EMBL: Z49992 - EMBL: D83026 - EMBL: AL009126 - PIR: H69651 - RefSeq: NP_391739.1 - ProteinModelPortal: P46321 - EnsemblBacteria: EBBACT00000003079 - GeneID: 937383 - GenomeReviews: AL009126_GR - KEGG: bsu:BSU38600 - NMPDR: fig|224308.1.peg.3865 - GenoList: BSU38600 - GeneTree: EBGT00070000032147 - HOGENOM: HBG338459 - OMA: IHENEIG - PhylomeDB: P46321 - ProtClustDB: CLSK888116 - BioCyc: BSUB:BSU38600-MONOMER - BRENDA: 2.7.1.69 - GO: GO:0006350 - InterPro: IPR013196 - InterPro: IPR007737 - InterPro: IPR011608 - InterPro: IPR016152 - InterPro: IPR002178 - InterPro: IPR013011 - InterPro: IPR003501 - InterPro: IPR011991 - Gene3D: G3DSA:1.10.1790.10 - Gene3D: G3DSA:3.40.930.10 - Gene3D: G3DSA:1.10.10.10
Pfam domain/function: PF08279 HTH_11; PF05043 Mga; PF00874 PRD; PF00359 PTS_EIIA_2; PF02302 PTS_IIB; SSF63520 PRD; SSF55804 PTrfase/Anion_transptr
EC number: =2.7.1.69
Molecular weight: Translated: 73316; Mature: 73316
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: PS00654 PRD_1; PS51372 PRD_2; PS51094 PTS_EIIA_TYPE_2; PS51099 PTS_EIIB_TYPE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLHGRLRDILRLLMAAEAPVTSSFFAAQLNVTTRTVRNDIKELQGVLSGHGAFVQSVRGS CCCHHHHHHHHHHHHCCCCCCCCHHHEEECHHHHHHHHHHHHHHHHHCCCHHHHHHHCCC GYKLRIDDEQVFRTLLQDEFQQKKGLPVLPEERMAYLMKRLLLADHYLKLDELAEELFIS CCEEEECHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KSTLQTDLKEVKKRLLPYRIVMETRPNYGFKLRGDEVQMRYCMAEYIVDERETEIDVLNE HHHHHHHHHHHHHHHCCEEEEEECCCCCCEEECCCHHHHHHHHHHHHHCCCCCHHHHHCC KADILPKEEIEIIRSAILKKMKNDRIPLSNMGLNNLIIHIAIACKRIRTENYVSLFPKDM HHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCHHH DHILHQKEYQAAEAIVKELESKLSVTFPKDETAYITMHLLGTKRMTQSQCGEDTFSIEEE HHHHHHHHHHHHHHHHHHHHHHCEEECCCCCCEEEEEEECCCHHHHHHHCCCCCCCCCCH TDQLTLAMIKAVDRELKLGILHDKELKIGLALHMKPAISRNRYGMNLRNPMLAAIKEHYP HHHHHHHHHHHHHHHHEEEEEECCCEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCC LAFEAGIIAGIVIKEQTGIEIHENEIGYLALHFGAAIERKKTESPPKRCIIVCASGAGSA CEEECCCEEEEEEEECCCCEEECCCCCEEEEEHHHHHHHHCCCCCCCEEEEEEECCCCHH QLLREKLRSHFGKRLDILGTAEYYSLDQMSYESIDFVISTIPIKKELPVPVLKVNTILGG HHHHHHHHHHCCCCEEEEECHHHHHHHHCCHHHHHHHHEECCCCCCCCCCEEEEEEEECC TDFTKIESILSDEKEKANRYLKKELVFFQEDLRSKEEVIQFLGQKVVECGFADEEIIDSI CCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHH FEREDMSPTCFGNLVAIPHPLVPQTKTTFWAVCTLKKPIDWESQRVQFVCLLCVEKENKA HHHCCCCCCCCCCCEECCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEEEEECCCCHH DLQSMYKLLGSILDDPAAMNQLIKCRSYQELSDVFDQKMLS HHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCC >Mature Secondary Structure MLHGRLRDILRLLMAAEAPVTSSFFAAQLNVTTRTVRNDIKELQGVLSGHGAFVQSVRGS CCCHHHHHHHHHHHHCCCCCCCCHHHEEECHHHHHHHHHHHHHHHHHCCCHHHHHHHCCC GYKLRIDDEQVFRTLLQDEFQQKKGLPVLPEERMAYLMKRLLLADHYLKLDELAEELFIS CCEEEECHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KSTLQTDLKEVKKRLLPYRIVMETRPNYGFKLRGDEVQMRYCMAEYIVDERETEIDVLNE HHHHHHHHHHHHHHHCCEEEEEECCCCCCEEECCCHHHHHHHHHHHHHCCCCCHHHHHCC KADILPKEEIEIIRSAILKKMKNDRIPLSNMGLNNLIIHIAIACKRIRTENYVSLFPKDM HHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCHHH DHILHQKEYQAAEAIVKELESKLSVTFPKDETAYITMHLLGTKRMTQSQCGEDTFSIEEE HHHHHHHHHHHHHHHHHHHHHHCEEECCCCCCEEEEEEECCCHHHHHHHCCCCCCCCCCH TDQLTLAMIKAVDRELKLGILHDKELKIGLALHMKPAISRNRYGMNLRNPMLAAIKEHYP HHHHHHHHHHHHHHHHEEEEEECCCEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCC LAFEAGIIAGIVIKEQTGIEIHENEIGYLALHFGAAIERKKTESPPKRCIIVCASGAGSA CEEECCCEEEEEEEECCCCEEECCCCCEEEEEHHHHHHHHCCCCCCCEEEEEEECCCCHH QLLREKLRSHFGKRLDILGTAEYYSLDQMSYESIDFVISTIPIKKELPVPVLKVNTILGG HHHHHHHHHHCCCCEEEEECHHHHHHHHCCHHHHHHHHEECCCCCCCCCCEEEEEEEECC TDFTKIESILSDEKEKANRYLKKELVFFQEDLRSKEEVIQFLGQKVVECGFADEEIIDSI CCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHH FEREDMSPTCFGNLVAIPHPLVPQTKTTFWAVCTLKKPIDWESQRVQFVCLLCVEKENKA HHHCCCCCCCCCCCEECCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEEEEECCCCHH DLQSMYKLLGSILDDPAAMNQLIKCRSYQELSDVFDQKMLS HHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8990303; 8969509; 9384377; 10438772