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The map label for this gene is ywaF

Identifier: 16080895

GI number: 16080895

Start: 3945530

End: 3946243

Strand: Reverse

Name: ywaF

Synonym: BSU38440

Alternate gene names: 16080895

Gene position: 3946243-3945530 (Counterclockwise)

Preceding gene: 16080899

Following gene: 16080894

Centisome position: 93.61

GC content: 45.24

Gene sequence:

>714_bases
TTGCAAAAATATGTTCAATCCGACTATAAGCATGATCCGTTTCATCTGTTTTCGACAGAGCATGTAGTGACGTTAGCGAT
TATCTCCCTTTTGGCCATTCTGTTGTTTTTGTTCCAAGATGAGGTCAAGCAGCCGAGGGCCAGCCGGTTTTTGCGTTCTC
TGTTTGTGTTTCTTTTGCTTGGTTCGCAAATCGGCTATCAAATATGGATGGTCGCCACGGACAGGTGGTCGGTGCGCACT
TCATTGCCTCTCCAGCTTAGTGACCTGTCGGTGTATTTGTCAGCTATTATGTTAGTGACAAAAAGCAGAAAGCTGTTTGT
GTTTTTGTTTTTTGTCGGCATCGGCAGTTCGATTCAGGCTCTTGCCACTCCTGACCTCGGTATGTTTTCATTTCCGCATA
TCCGATATATCCTCTTTTTTATTTCTCACGGGTCTGTGTTTTTATCCTGTCTGCTGATGGCTGTGATTGGCACCTACAGA
ATGGGCCAGCGCTCGTTATGGGTGACAGTCCTGCTTGTTAATGTGTACGGCGTCTGTATTTTTCTGATTGATCGCTGGCT
TGGCGCGAATTATATGTATTTGACGAAAAAACCGGGCGGTTCCTCTCTCTTAGATGTTCTCGGGCCATGGCCGTGGTATA
TCGTCTCGGCTGAAGCCATCACAATCGCAAGCTTTTTCATTCTTTATTGGCTTTATCGCATCTTCAAAAAATGA

Upstream 100 bases:

>100_bases
TAACAGAGTCTGGTGTGAACTTCAAGCCCATATATCGGTTGAATAAAAAAAGCCCAAACAACGCCAAAATAAACAAAAAC
CCGAAAACGGGGGTGCAGTT

Downstream 100 bases:

>100_bases
CACCTTTTTTGTTGTATCACACATTCTGTTTAAAAAAATGTCGGAGAACGTGTTTATTTTTTTGAAAAAGGGTATGTAAC
TTGTACAACAAAAAGGGAGA

Product: integral inner membrane protein

Products: NA

Alternate protein names: ORF1

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MQKYVQSDYKHDPFHLFSTEHVVTLAIISLLAILLFLFQDEVKQPRASRFLRSLFVFLLLGSQIGYQIWMVATDRWSVRT
SLPLQLSDLSVYLSAIMLVTKSRKLFVFLFFVGIGSSIQALATPDLGMFSFPHIRYILFFISHGSVFLSCLLMAVIGTYR
MGQRSLWVTVLLVNVYGVCIFLIDRWLGANYMYLTKKPGGSSLLDVLGPWPWYIVSAEAITIASFFILYWLYRIFKK

Sequences:

>Translated_237_residues
MQKYVQSDYKHDPFHLFSTEHVVTLAIISLLAILLFLFQDEVKQPRASRFLRSLFVFLLLGSQIGYQIWMVATDRWSVRT
SLPLQLSDLSVYLSAIMLVTKSRKLFVFLFFVGIGSSIQALATPDLGMFSFPHIRYILFFISHGSVFLSCLLMAVIGTYR
MGQRSLWVTVLLVNVYGVCIFLIDRWLGANYMYLTKKPGGSSLLDVLGPWPWYIVSAEAITIASFFILYWLYRIFKK
>Mature_237_residues
MQKYVQSDYKHDPFHLFSTEHVVTLAIISLLAILLFLFQDEVKQPRASRFLRSLFVFLLLGSQIGYQIWMVATDRWSVRT
SLPLQLSDLSVYLSAIMLVTKSRKLFVFLFFVGIGSSIQALATPDLGMFSFPHIRYILFFISHGSVFLSCLLMAVIGTYR
MGQRSLWVTVLLVNVYGVCIFLIDRWLGANYMYLTKKPGGSSLLDVLGPWPWYIVSAEAITIASFFILYWLYRIFKK

Specific function: Unknown

COG id: COG5522

COG function: function code S; Predicted integral membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YWAF_BACSU (P25149)

Other databases:

- EMBL:   X52480
- EMBL:   X73124
- EMBL:   AL009126
- PIR:   S16424
- RefSeq:   NP_391723.1
- ProteinModelPortal:   P25149
- EnsemblBacteria:   EBBACT00000001525
- GeneID:   937341
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU38440
- NMPDR:   fig|224308.1.peg.3849
- GenoList:   BSU38440
- GeneTree:   EBGT00050000002321
- HOGENOM:   HBG341481
- OMA:   QSEWNIT
- ProtClustDB:   CLSK2393406
- BioCyc:   BSUB:BSU38440-MONOMER
- InterPro:   IPR011737
- TIGRFAMs:   TIGR02206

Pfam domain/function: PF09529 Intg_mem_TP0381

EC number: NA

Molecular weight: Translated: 27300; Mature: 27300

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x133d3004)-; HASH(0x11545e34)-; HASH(0x12199da4)-; HASH(0x1320e438)-; HASH(0x133a503c)-; HASH(0x133a51d4)-; HASH(0x13189f48)-;

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKYVQSDYKHDPFHLFSTEHVVTLAIISLLAILLFLFQDEVKQPRASRFLRSLFVFLLL
CCCHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
GSQIGYQIWMVATDRWSVRTSLPLQLSDLSVYLSAIMLVTKSRKLFVFLFFVGIGSSIQA
HCCCCEEEEEEEECCEEEEECCCEEHHHHHHHHHHHHHHHCCCHHHHHHEEHHCCCCCHH
LATPDLGMFSFPHIRYILFFISHGSVFLSCLLMAVIGTYRMGQRSLWVTVLLVNVYGVCI
HCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
FLIDRWLGANYMYLTKKPGGSSLLDVLGPWPWYIVSAEAITIASFFILYWLYRIFKK
HHHHHHHCCCEEEEEECCCCCHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHCH
>Mature Secondary Structure
MQKYVQSDYKHDPFHLFSTEHVVTLAIISLLAILLFLFQDEVKQPRASRFLRSLFVFLLL
CCCHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
GSQIGYQIWMVATDRWSVRTSLPLQLSDLSVYLSAIMLVTKSRKLFVFLFFVGIGSSIQA
HCCCCEEEEEEEECCEEEEECCCEEHHHHHHHHHHHHHHHCCCHHHHHHEEHHCCCCCHH
LATPDLGMFSFPHIRYILFFISHGSVFLSCLLMAVIGTYRMGQRSLWVTVLLVNVYGVCI
HCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
FLIDRWLGANYMYLTKKPGGSSLLDVLGPWPWYIVSAEAITIASFFILYWLYRIFKK
HHHHHHHCCCEEEEEECCCCCHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1806041; 7934828; 9384377