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The map label for this gene is ywbD

Identifier: 16080887

GI number: 16080887

Start: 3935824

End: 3937014

Strand: Reverse

Name: ywbD

Synonym: BSU38360

Alternate gene names: 16080887

Gene position: 3937014-3935824 (Counterclockwise)

Preceding gene: 16080889

Following gene: 16080882

Centisome position: 93.39

GC content: 47.27

Gene sequence:

>1191_bases
ATGAAGCTACTCACCCTAAAAAAAGCACACGCTGCCAAAATAAAAAAAGGCTATCCCCTTATTGAAAAAGAAGCTCTCGC
AGGGAGTGCGGGGCACATGAAAGAAGGAGACCTCGTTGATATCGTGTCTGAGAGCGGCGGCGAGTTTCTCGCGCGGGGCT
ATTACGGCCTGCAAAACAAAGGGGTTGGCTGGACGCTTACCCGCAATAAACATGAACAGATTGACCAAGCATTTTTTCTC
AGCAAATTAACAAAAGCGGCCCAAGCGCGCGCCAAACTATTTGAGGCTCAAGATACAACAGCTTTCCGCCTGTTCAACGG
TGAGGGTGACGGTGTCGGCGGCGTCACCATCGACTATTATGACGGCTACCTGCTGATTCAATGGTACAGCAAGGGAATTT
ACACCTTTAAAGACATGCTGATTTCCGCATTGGATGAGATGGATCTTGATTATAAAGCGATTTACGAGAAGAAACGCTTC
GACACGGCTGGACAATACGTTGAAGATGATGACTTCGTGAAAGGGAGAAGGGGCGAGTTCCCGATCATCATCCAAGAGAA
TGGCATTCAATACGCGGTGGATCTGAATGAAGGCGCCATGACGGGCATCTTTTTGGATCAGAGACATGTGCGCAAGGCGA
TCAGAGACCGCTATGCAAAAGGGAAAACCGTTTTAAATACGTTTTCTTATACGGGTGCATTCTCCGTGGCGGCGGCGCTT
GGCGGAGCGGAGAAAACAACAAGCGTCGACGTGGCAAATCGAAGTCTTGCCAAAACGATCGAGCAATTCAGCGTGAACAA
GCTGGATTACGAAGCGCACGACATTAAAGTGATGGACGTTTTTAACTATTTTTCATATGCTGCAAAAAAGGATTTGCGCT
TTGATCTGATTATTCTAGATCCGCCTTCCTTTGCGCGCACAAAAAAACGCACCTTCAGCGCGGCCAAGGATTATAAAAAC
CTGCTGAAGGAAACGATCGCCATCACTGCTGACAAGGGTGTCATTGTTGCCTCTACAAACAGCAGCGCCTTTGGCATGAA
GAAGTTCAAAGGCTTTATTGATGCCGCCTTTAAAGAAACAAATGAACGCTACACGATCATTGAGGAATTTACGCTGCCGG
AGGATTTCAAAACGATTTCGGCATTTCCGGAAGGCAACTACCTGAAAGTGGTCCTTCTGCAGAAAAAATAA

Upstream 100 bases:

>100_bases
TTTTTGTCTATCGTAGAAAAACCTTTCCTTTCTGTCAATGCAGACATCTTGGCGTTTTGTGGTACCATAAGAGAAAGCAA
ACGGAAAGAGGACGACATAT

Downstream 100 bases:

>100_bases
ATGAAAAAGCTGCCCTGTTCAGGGGCAGCTTTTTTTTATGTAGAAACGATCTGCTGGTCGCGGCCGATGCGGCCATCTTC
AAGACGGACTTTAATGCCAT

Product: AdoMet-dependent methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 396

Protein sequence:

>396_residues
MKLLTLKKAHAAKIKKGYPLIEKEALAGSAGHMKEGDLVDIVSESGGEFLARGYYGLQNKGVGWTLTRNKHEQIDQAFFL
SKLTKAAQARAKLFEAQDTTAFRLFNGEGDGVGGVTIDYYDGYLLIQWYSKGIYTFKDMLISALDEMDLDYKAIYEKKRF
DTAGQYVEDDDFVKGRRGEFPIIIQENGIQYAVDLNEGAMTGIFLDQRHVRKAIRDRYAKGKTVLNTFSYTGAFSVAAAL
GGAEKTTSVDVANRSLAKTIEQFSVNKLDYEAHDIKVMDVFNYFSYAAKKDLRFDLIILDPPSFARTKKRTFSAAKDYKN
LLKETIAITADKGVIVASTNSSAFGMKKFKGFIDAAFKETNERYTIIEEFTLPEDFKTISAFPEGNYLKVVLLQKK

Sequences:

>Translated_396_residues
MKLLTLKKAHAAKIKKGYPLIEKEALAGSAGHMKEGDLVDIVSESGGEFLARGYYGLQNKGVGWTLTRNKHEQIDQAFFL
SKLTKAAQARAKLFEAQDTTAFRLFNGEGDGVGGVTIDYYDGYLLIQWYSKGIYTFKDMLISALDEMDLDYKAIYEKKRF
DTAGQYVEDDDFVKGRRGEFPIIIQENGIQYAVDLNEGAMTGIFLDQRHVRKAIRDRYAKGKTVLNTFSYTGAFSVAAAL
GGAEKTTSVDVANRSLAKTIEQFSVNKLDYEAHDIKVMDVFNYFSYAAKKDLRFDLIILDPPSFARTKKRTFSAAKDYKN
LLKETIAITADKGVIVASTNSSAFGMKKFKGFIDAAFKETNERYTIIEEFTLPEDFKTISAFPEGNYLKVVLLQKK
>Mature_396_residues
MKLLTLKKAHAAKIKKGYPLIEKEALAGSAGHMKEGDLVDIVSESGGEFLARGYYGLQNKGVGWTLTRNKHEQIDQAFFL
SKLTKAAQARAKLFEAQDTTAFRLFNGEGDGVGGVTIDYYDGYLLIQWYSKGIYTFKDMLISALDEMDLDYKAIYEKKRF
DTAGQYVEDDDFVKGRRGEFPIIIQENGIQYAVDLNEGAMTGIFLDQRHVRKAIRDRYAKGKTVLNTFSYTGAFSVAAAL
GGAEKTTSVDVANRSLAKTIEQFSVNKLDYEAHDIKVMDVFNYFSYAAKKDLRFDLIILDPPSFARTKKRTFSAAKDYKN
LLKETIAITADKGVIVASTNSSAFGMKKFKGFIDAAFKETNERYTIIEEFTLPEDFKTISAFPEGNYLKVVLLQKK

Specific function: Unknown

COG id: COG1092

COG function: function code R; Predicted SAM-dependent methyltransferases

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PUA domain

Homologues:

Organism=Escherichia coli, GI145693111, Length=390, Percent_Identity=32.3076923076923, Blast_Score=193, Evalue=2e-50,
Organism=Escherichia coli, GI1787181, Length=204, Percent_Identity=32.843137254902, Blast_Score=95, Evalue=8e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YWBD_BACSU (P39587)

Other databases:

- EMBL:   X73124
- EMBL:   AL009126
- PIR:   S39674
- RefSeq:   NP_391715.1
- ProteinModelPortal:   P39587
- SMR:   P39587
- EnsemblBacteria:   EBBACT00000002708
- GeneID:   937328
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU38360
- NMPDR:   fig|224308.1.peg.3841
- GenoList:   BSU38360
- GeneTree:   EBGT00050000001685
- HOGENOM:   HBG514942
- OMA:   MDVFDYF
- PhylomeDB:   P39587
- ProtClustDB:   CLSK2752556
- BioCyc:   BSUB:BSU38360-MONOMER
- GO:   GO:0005737
- InterPro:   IPR002478
- InterPro:   IPR015947
- InterPro:   IPR019614
- SMART:   SM00359

Pfam domain/function: PF10672 Methyltrans_SAM; SSF88697 PUA-like

EC number: NA

Molecular weight: Translated: 44444; Mature: 44444

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: PS50890 PUA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLLTLKKAHAAKIKKGYPLIEKEALAGSAGHMKEGDLVDIVSESGGEFLARGYYGLQNK
CCEEEECHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCEEEEECCCCCCEEECCCCCCCCC
GVGWTLTRNKHEQIDQAFFLSKLTKAAQARAKLFEAQDTTAFRLFNGEGDGVGGVTIDYY
CCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEE
DGYLLIQWYSKGIYTFKDMLISALDEMDLDYKAIYEKKRFDTAGQYVEDDDFVKGRRGEF
CCEEEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
PIIIQENGIQYAVDLNEGAMTGIFLDQRHVRKAIRDRYAKGKTVLNTFSYTGAFSVAAAL
CEEEECCCEEEEEECCCCCEEEEEECHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHH
GGAEKTTSVDVANRSLAKTIEQFSVNKLDYEAHDIKVMDVFNYFSYAAKKDLRFDLIILD
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHCCCCEEEEEEEC
PPSFARTKKRTFSAAKDYKNLLKETIAITADKGVIVASTNSSAFGMKKFKGFIDAAFKET
CCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCEEEEECCCCCCCHHHHHHHHHHHHHCC
NERYTIIEEFTLPEDFKTISAFPEGNYLKVVLLQKK
CCCEEEEEECCCCCCHHHHCCCCCCCEEEEEEEECC
>Mature Secondary Structure
MKLLTLKKAHAAKIKKGYPLIEKEALAGSAGHMKEGDLVDIVSESGGEFLARGYYGLQNK
CCEEEECHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCEEEEECCCCCCEEECCCCCCCCC
GVGWTLTRNKHEQIDQAFFLSKLTKAAQARAKLFEAQDTTAFRLFNGEGDGVGGVTIDYY
CCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEE
DGYLLIQWYSKGIYTFKDMLISALDEMDLDYKAIYEKKRFDTAGQYVEDDDFVKGRRGEF
CCEEEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
PIIIQENGIQYAVDLNEGAMTGIFLDQRHVRKAIRDRYAKGKTVLNTFSYTGAFSVAAAL
CEEEECCCEEEEEECCCCCEEEEEECHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHH
GGAEKTTSVDVANRSLAKTIEQFSVNKLDYEAHDIKVMDVFNYFSYAAKKDLRFDLIILD
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHCCCCEEEEEEEC
PPSFARTKKRTFSAAKDYKNLLKETIAITADKGVIVASTNSSAFGMKKFKGFIDAAFKET
CCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCEEEEECCCCCCCHHHHHHHHHHHHHCC
NERYTIIEEFTLPEDFKTISAFPEGNYLKVVLLQKK
CCCEEEEEECCCCCCHHHHCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377