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The map label for this gene is ywdE

Identifier: 16080850

GI number: 16080850

Start: 3899272

End: 3899805

Strand: Reverse

Name: ywdE

Synonym: BSU37990

Alternate gene names: 16080850

Gene position: 3899805-3899272 (Counterclockwise)

Preceding gene: 255767802

Following gene: 16080849

Centisome position: 92.51

GC content: 44.94

Gene sequence:

>534_bases
GTGAGGATTAGCTCTTGTTTATATGGTTTTGTAGCTCATGGGGCAGTATTTTTGTTTACTGGTGGCTGCATGCTCTTGGC
TATGGCAGCCAGCTTGCCTTTTGTTTTTCTGCTTGATCGGCTGCCTGATGTCGTCTTTACAGCAGGTGCCATTCTTACGC
TGCTATGTTCATATGCTTATGTCTGGTTTTGGGCGGTCCGATTTGCATATAACCAGAAAATGCGCCTGTTTGAGGTTCAA
TTGGGGTCCTTTGTGTTGCTAGCCCTCATGATATCTTTGTTTTTATTGGATGGATCTAGTATGAAAGACATCATGATGAA
TTGGGACGATGCAGGCTGTGCTTTTGTGCCGCCGGCTTTTACATTTTTGTGTCTTTCTTATGCACTGGTGCTGCTGCCGG
TCTATCAATCTAAGCTGTGGCGTCTTATCCTTCCGAATGGCGTCCGCATGAAAGATATCTTTCATGTCTTTGGAGATCTG
ATGCTGATCATGGTGCTTCTGATCGGAGCCACTTTGCTGTTTCTATCATTGTAG

Upstream 100 bases:

>100_bases
TTCCGTTATTTGGCCGAATGGGCTGTTATATTGGCAGGCGTCAGCTTGTCTGATTTTTTAGGTATATACATAGAATTTCT
ATGTAAAGGAGGTGTATGTC

Downstream 100 bases:

>100_bases
TATGCCGTTTCAGTAGGATATTCCCACTGATCTCCCGTCCAATATATGTTTTAATAGTACATGACTATGAAAATGAGAAG
GAGAGCATCATGAAGATTTC

Product: integral inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 177; Mature: 177

Protein sequence:

>177_residues
MRISSCLYGFVAHGAVFLFTGGCMLLAMAASLPFVFLLDRLPDVVFTAGAILTLLCSYAYVWFWAVRFAYNQKMRLFEVQ
LGSFVLLALMISLFLLDGSSMKDIMMNWDDAGCAFVPPAFTFLCLSYALVLLPVYQSKLWRLILPNGVRMKDIFHVFGDL
MLIMVLLIGATLLFLSL

Sequences:

>Translated_177_residues
MRISSCLYGFVAHGAVFLFTGGCMLLAMAASLPFVFLLDRLPDVVFTAGAILTLLCSYAYVWFWAVRFAYNQKMRLFEVQ
LGSFVLLALMISLFLLDGSSMKDIMMNWDDAGCAFVPPAFTFLCLSYALVLLPVYQSKLWRLILPNGVRMKDIFHVFGDL
MLIMVLLIGATLLFLSL
>Mature_177_residues
MRISSCLYGFVAHGAVFLFTGGCMLLAMAASLPFVFLLDRLPDVVFTAGAILTLLCSYAYVWFWAVRFAYNQKMRLFEVQ
LGSFVLLALMISLFLLDGSSMKDIMMNWDDAGCAFVPPAFTFLCLSYALVLLPVYQSKLWRLILPNGVRMKDIFHVFGDL
MLIMVLLIGATLLFLSL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YWDE_BACSU (P39613)

Other databases:

- EMBL:   X73124
- EMBL:   AL009126
- PIR:   S39710
- RefSeq:   NP_391678.1
- ProteinModelPortal:   P39613
- EnsemblBacteria:   EBBACT00000001758
- GeneID:   937260
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU37990
- NMPDR:   fig|224308.1.peg.3804
- GenoList:   BSU37990
- GeneTree:   EBGT00050000001996
- HOGENOM:   HBG338448
- OMA:   VYQSKLW
- ProtClustDB:   CLSK888089
- BioCyc:   BSUB:BSU37990-MONOMER

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19867; Mature: 19867

Theoretical pI: Translated: 7.84; Mature: 7.84

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1293884c)-; HASH(0x12843758)-; HASH(0x1314f2bc)-; HASH(0x40c1af80)-;

Cys/Met content:

2.8 %Cys     (Translated Protein)
6.2 %Met     (Translated Protein)
9.0 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
6.2 %Met     (Mature Protein)
9.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRISSCLYGFVAHGAVFLFTGGCMLLAMAASLPFVFLLDRLPDVVFTAGAILTLLCSYAY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VWFWAVRFAYNQKMRLFEVQLGSFVLLALMISLFLLDGSSMKDIMMNWDDAGCAFVPPAF
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCHHH
TFLCLSYALVLLPVYQSKLWRLILPNGVRMKDIFHVFGDLMLIMVLLIGATLLFLSL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
>Mature Secondary Structure
MRISSCLYGFVAHGAVFLFTGGCMLLAMAASLPFVFLLDRLPDVVFTAGAILTLLCSYAY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VWFWAVRFAYNQKMRLFEVQLGSFVLLALMISLFLLDGSSMKDIMMNWDDAGCAFVPPAF
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCHHH
TFLCLSYALVLLPVYQSKLWRLILPNGVRMKDIFHVFGDLMLIMVLLIGATLLFLSL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377