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The map label for this gene is ywdF

Identifier: 16080849

GI number: 16080849

Start: 3898376

End: 3899182

Strand: Reverse

Name: ywdF

Synonym: BSU37980

Alternate gene names: 16080849

Gene position: 3899182-3898376 (Counterclockwise)

Preceding gene: 16080850

Following gene: 16080848

Centisome position: 92.49

GC content: 47.58

Gene sequence:

>807_bases
ATGAAGATTTCTATCGTAATTGTGACCTATAATCGGATTCCGGCTTTGTGTGAGCTTTTGGAGTCGATTTCCCGCCAGAC
CTTGATGCCGTATGAAATTATTATTGTGAATGATGCCGGGGAATCGGTCGTGCCGGTCAAAGCACTTTATCCGGAGCTGC
CGATTGCTGTCATCAATTTAGAAAAGAACTCGGGGCATGTGGCTGCGAGAAATGCCGGTGTAAAAGAGGCGTCTGGGGAT
TGCATTATGCTGTGTGATGACGATGATTTCTTTACGCCAGGGCATATCGAGAAAATGGCAAAGGAAATAGAAACGGCAGA
CTTCGTTCATTCTGATGCGGAAATAGTTTCGTTTGAAGAGAAAAACGGAACAAGGTATCCAGTGTCACGGAAATTGTTTG
CTTATACCGCTGACTATGAGGATATGAGAGTGTTTTCTACATACGTGCCGTCGGGCAGCATGTACAGACGTTTTCTGCAT
GATGAAATCGGGTATTTCGATGCTGATGTGCACAATTACTGGGACTGGGATTTTTATTTGCGCGCGGCCAAGGATTACCG
GGTGAAGCGTGTCCCTTGCGCCAGCGTGATTTATGCCTTCAGTGACGCGGGAGACAATCAGTCTGCTGACCTTGGCGCCA
AGCGGAAGCAATATTTGGATCGTTTAAGTGAAAAGCACGGACTCGGGGAGCTGCCGACGAAAAACTTTGCCGTCCTGCTT
GAAGAGCCTGAGATGAAGAGGCGGGAAGCAAAAAGTGAAATGGTTTGGGATGGCGAGCCTGTCTATTCCAGACTTCATCG
TTCGTAA

Upstream 100 bases:

>100_bases
TATCATTGTAGTATGCCGTTTCAGTAGGATATTCCCACTGATCTCCCGTCCAATATATGTTTTAATAGTACATGACTATG
AAAATGAGAAGGAGAGCATC

Downstream 100 bases:

>100_bases
GGAGGCCTGAATCTTGAAACAGCTTTTACAAGACAGCTGGTGGAATCAGCTAAAGGAAGAGTTTGAGAAACCGTATTATC
AAGAGCTCAGAGAGATGCTG

Product: glycosyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MKISIVIVTYNRIPALCELLESISRQTLMPYEIIIVNDAGESVVPVKALYPELPIAVINLEKNSGHVAARNAGVKEASGD
CIMLCDDDDFFTPGHIEKMAKEIETADFVHSDAEIVSFEEKNGTRYPVSRKLFAYTADYEDMRVFSTYVPSGSMYRRFLH
DEIGYFDADVHNYWDWDFYLRAAKDYRVKRVPCASVIYAFSDAGDNQSADLGAKRKQYLDRLSEKHGLGELPTKNFAVLL
EEPEMKRREAKSEMVWDGEPVYSRLHRS

Sequences:

>Translated_268_residues
MKISIVIVTYNRIPALCELLESISRQTLMPYEIIIVNDAGESVVPVKALYPELPIAVINLEKNSGHVAARNAGVKEASGD
CIMLCDDDDFFTPGHIEKMAKEIETADFVHSDAEIVSFEEKNGTRYPVSRKLFAYTADYEDMRVFSTYVPSGSMYRRFLH
DEIGYFDADVHNYWDWDFYLRAAKDYRVKRVPCASVIYAFSDAGDNQSADLGAKRKQYLDRLSEKHGLGELPTKNFAVLL
EEPEMKRREAKSEMVWDGEPVYSRLHRS
>Mature_268_residues
MKISIVIVTYNRIPALCELLESISRQTLMPYEIIIVNDAGESVVPVKALYPELPIAVINLEKNSGHVAARNAGVKEASGD
CIMLCDDDDFFTPGHIEKMAKEIETADFVHSDAEIVSFEEKNGTRYPVSRKLFAYTADYEDMRVFSTYVPSGSMYRRFLH
DEIGYFDADVHNYWDWDFYLRAAKDYRVKRVPCASVIYAFSDAGDNQSADLGAKRKQYLDRLSEKHGLGELPTKNFAVLL
EEPEMKRREAKSEMVWDGEPVYSRLHRS

Specific function: Slime polysaccharide colanic acid biosynthesis. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YWDF_BACSU (P39614)

Other databases:

- EMBL:   X73124
- EMBL:   AL009126
- PIR:   S39711
- RefSeq:   NP_391677.1
- ProteinModelPortal:   P39614
- EnsemblBacteria:   EBBACT00000001455
- GeneID:   937259
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU37980
- NMPDR:   fig|224308.1.peg.3803
- GenoList:   BSU37980
- GeneTree:   EBGT00050000000549
- HOGENOM:   HBG313943
- OMA:   FLFAYEY
- ProtClustDB:   CLSK888088
- BioCyc:   BSUB:BSU37980-MONOMER
- InterPro:   IPR001173

Pfam domain/function: PF00535 Glycos_transf_2

EC number: NA

Molecular weight: Translated: 30617; Mature: 30617

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKISIVIVTYNRIPALCELLESISRQTLMPYEIIIVNDAGESVVPVKALYPELPIAVINL
CEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEHHHHCCCCCEEEEEE
EKNSGHVAARNAGVKEASGDCIMLCDDDDFFTPGHIEKMAKEIETADFVHSDAEIVSFEE
ECCCCEEEECCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEC
KNGTRYPVSRKLFAYTADYEDMRVFSTYVPSGSMYRRFLHDEIGYFDADVHNYWDWDFYL
CCCCCCCCCCEEEEEECCCCHHEEEEEECCCHHHHHHHHHHHCCCEECCCCCCCCHHHEE
RAAKDYRVKRVPCASVIYAFSDAGDNQSADLGAKRKQYLDRLSEKHGLGELPTKNFAVLL
EECCCCCEECCCHHHHHEEHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEE
EEPEMKRREAKSEMVWDGEPVYSRLHRS
CCCHHHHHHHHHCCCCCCCHHHHHHCCC
>Mature Secondary Structure
MKISIVIVTYNRIPALCELLESISRQTLMPYEIIIVNDAGESVVPVKALYPELPIAVINL
CEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEHHHHCCCCCEEEEEE
EKNSGHVAARNAGVKEASGDCIMLCDDDDFFTPGHIEKMAKEIETADFVHSDAEIVSFEE
ECCCCEEEECCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEC
KNGTRYPVSRKLFAYTADYEDMRVFSTYVPSGSMYRRFLHDEIGYFDADVHNYWDWDFYL
CCCCCCCCCCEEEEEECCCCHHEEEEEECCCHHHHHHHHHHHCCCEECCCCCCCCHHHEE
RAAKDYRVKRVPCASVIYAFSDAGDNQSADLGAKRKQYLDRLSEKHGLGELPTKNFAVLL
EECCCCCEECCCHHHHHEEHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEE
EEPEMKRREAKSEMVWDGEPVYSRLHRS
CCCHHHHHHHHHCCCCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377