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The map label for this gene is ywhA

Identifier: 16080807

GI number: 16080807

Start: 3853717

End: 3854136

Strand: Reverse

Name: ywhA

Synonym: BSU37550

Alternate gene names: 16080807

Gene position: 3854136-3853717 (Counterclockwise)

Preceding gene: 255767793

Following gene: 16080805

Centisome position: 91.43

GC content: 45.24

Gene sequence:

>420_bases
ATGGACCATGACAAACTGGAAGCAAATTTGCTGGATCACGCACTTACAAAGTATTTGAAAAGCACGAAGCAATTAGATGA
AGCCACCGTTCCGAAACACGTGAATAATGTAAGAGGGTTTATTCTGCGGATCATATACAGACATGGGAGCTGCACCATAA
AGGATATTTTGAAGGAGGTCACACTGTCTCCCTCTGCCACGACCACAGCTCTGAATCATTTAGAGCAGGAAGGGTTTATT
GAGAGATCCAGAAATAACAATGACCGCCGCACTGTATGGATTACTCTTTCTGAATCGGGCCGGGGAGCGGCTGAACAAAT
GATCGAAAACCGCCAGCAGCTGATTGATGGCATGTTTGAACGTTTAACAGCCGAAGAGAAAAAGACGTTCTTGGCGATTA
TTGCGAAGCTGGCTCAATAG

Upstream 100 bases:

>100_bases
CATTTTGCTTTTTTGACTTTCCCTATTCGGAATCAGTAAAATAATAAGTAAATCATATCGTTCGTATGTTATGAATGCAT
CTCGAAATGGGGAAATTGAC

Downstream 100 bases:

>100_bases
GGATAATAAAAGCCGGTGCGCGAAGCGCCGGCTTTATAGAGATTATTCCATATCGCTCAGGCGTTTGCCTGCGACGGCAT
AATGGTCTTTTCTCATTTCT

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MDHDKLEANLLDHALTKYLKSTKQLDEATVPKHVNNVRGFILRIIYRHGSCTIKDILKEVTLSPSATTTALNHLEQEGFI
ERSRNNNDRRTVWITLSESGRGAAEQMIENRQQLIDGMFERLTAEEKKTFLAIIAKLAQ

Sequences:

>Translated_139_residues
MDHDKLEANLLDHALTKYLKSTKQLDEATVPKHVNNVRGFILRIIYRHGSCTIKDILKEVTLSPSATTTALNHLEQEGFI
ERSRNNNDRRTVWITLSESGRGAAEQMIENRQQLIDGMFERLTAEEKKTFLAIIAKLAQ
>Mature_139_residues
MDHDKLEANLLDHALTKYLKSTKQLDEATVPKHVNNVRGFILRIIYRHGSCTIKDILKEVTLSPSATTTALNHLEQEGFI
ERSRNNNDRRTVWITLSESGRGAAEQMIENRQQLIDGMFERLTAEEKKTFLAIIAKLAQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YWHA_BACSU (P70993)

Other databases:

- EMBL:   Z80360
- EMBL:   AL009126
- PIR:   B70057
- RefSeq:   NP_391635.1
- ProteinModelPortal:   P70993
- SMR:   P70993
- EnsemblBacteria:   EBBACT00000002216
- GeneID:   937081
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU37550
- NMPDR:   fig|224308.1.peg.3761
- GenoList:   BSU37550
- GeneTree:   EBGT00070000032282
- HOGENOM:   HBG338427
- OMA:   FILRIIY
- ProtClustDB:   CLSK888065
- BioCyc:   BSUB:BSU37550-MONOMER
- GO:   GO:0005622
- InterPro:   IPR000835
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PRINTS:   PR00598
- SMART:   SM00347

Pfam domain/function: PF01047 MarR

EC number: NA

Molecular weight: Translated: 15874; Mature: 15874

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: PS01117 HTH_MARR_1; PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDHDKLEANLLDHALTKYLKSTKQLDEATVPKHVNNVRGFILRIIYRHGSCTIKDILKEV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
TLSPSATTTALNHLEQEGFIERSRNNNDRRTVWITLSESGRGAAEQMIENRQQLIDGMFE
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
RLTAEEKKTFLAIIAKLAQ
HHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MDHDKLEANLLDHALTKYLKSTKQLDEATVPKHVNNVRGFILRIIYRHGSCTIKDILKEV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
TLSPSATTTALNHLEQEGFIERSRNNNDRRTVWITLSESGRGAAEQMIENRQQLIDGMFE
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
RLTAEEKKTFLAIIAKLAQ
HHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377