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The map label for this gene is arfM

Identifier: 16080782

GI number: 16080782

Start: 3830141

End: 3830617

Strand: Reverse

Name: arfM

Synonym: BSU37290

Alternate gene names: 16080782

Gene position: 3830617-3830141 (Counterclockwise)

Preceding gene: 16080784

Following gene: 255767790

Centisome position: 90.87

GC content: 39.2

Gene sequence:

>477_bases
ATGAATCAGTGTGACTATTTATTATTTCTGAAACAACTTCCTATGTTTAATGAAGTGCCTCTATCCATTGTCGAAACCTT
GCTGAAAAACGGCACGTTTATCCGCGGTTCATGTGATCAGTCTCCATCTTTTCTTCATTCTCAATCTGTTTATATTGTAT
TAAAAGGCAGTGTCCGTTTTATGGACACAAGGCTCCCTGAAGGGTCGAAAACCGTTGCGCTGTGGGAAAAAGGCGATGTG
TTTCCGATTGATGAAAAAGGCGGGCTTTATTTATCGCCCTTTATCTCAGTCAATGCCACTTCAGACATTCTGATTCTCAA
CATCCCATATTACATATTTAAGAAAATGATGTCTTATCATCCGCAGCTGCAAATGAACTTTTTGGCTATGCTTCAGCAAA
ATGTTTTTTGTTCCTATCAATTATTTTTGCGGTATCTGCATACATCACAGGATGAAAACGCTGAGCCCGGTTCTTAA

Upstream 100 bases:

>100_bases
CTGATAAGTGACATTCATCATACAGGCTGTGAAATACATCACTGCTGTACAGGCTCAGTCGAGCTACACTAAAGCTATCC
TTAGCACAGGAGGTTTTCCT

Downstream 100 bases:

>100_bases
ATAGAGCCGGTTTTTTTTGATCTTTGAATGAAAGGCAGCTAATGACCCAAGCGTCCTGCCTGAACGCAGCCTTCCTTCTC
CTTTGTGTGAACATTTTGTG

Product: transcriptional regulator

Products: NA

Alternate protein names: Anaerobic respiration and fermentation modulator

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MNQCDYLLFLKQLPMFNEVPLSIVETLLKNGTFIRGSCDQSPSFLHSQSVYIVLKGSVRFMDTRLPEGSKTVALWEKGDV
FPIDEKGGLYLSPFISVNATSDILILNIPYYIFKKMMSYHPQLQMNFLAMLQQNVFCSYQLFLRYLHTSQDENAEPGS

Sequences:

>Translated_158_residues
MNQCDYLLFLKQLPMFNEVPLSIVETLLKNGTFIRGSCDQSPSFLHSQSVYIVLKGSVRFMDTRLPEGSKTVALWEKGDV
FPIDEKGGLYLSPFISVNATSDILILNIPYYIFKKMMSYHPQLQMNFLAMLQQNVFCSYQLFLRYLHTSQDENAEPGS
>Mature_158_residues
MNQCDYLLFLKQLPMFNEVPLSIVETLLKNGTFIRGSCDQSPSFLHSQSVYIVLKGSVRFMDTRLPEGSKTVALWEKGDV
FPIDEKGGLYLSPFISVNATSDILILNIPYYIFKKMMSYHPQLQMNFLAMLQQNVFCSYQLFLRYLHTSQDENAEPGS

Specific function: Activates, in anaerobic conditions, the transcription of the fermentative operons lctEP and alsDS, of the hmp gene encoding a flavohemoglobin-like protein, the nitrite reductase operon nasDE and the heme biosynthesis genes hemN and hemZ

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ARFM_BACSU (P46910)

Other databases:

- EMBL:   Z49884
- EMBL:   AL009126
- PIR:   S60084
- RefSeq:   NP_391610.1
- ProteinModelPortal:   P46910
- EnsemblBacteria:   EBBACT00000000687
- GeneID:   937058
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU37290
- NMPDR:   fig|224308.1.peg.3736
- GenoList:   BSU37290
- GeneTree:   EBGT00050000002510
- HOGENOM:   HBG338414
- OMA:   YQLFLRY
- ProtClustDB:   CLSK872645
- BioCyc:   BSUB:BSU37290-MONOMER
- GO:   GO:0006350
- InterPro:   IPR018490
- InterPro:   IPR014710
- Gene3D:   G3DSA:2.60.120.10

Pfam domain/function: SSF51206 cNMP_binding

EC number: NA

Molecular weight: Translated: 18136; Mature: 18136

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQCDYLLFLKQLPMFNEVPLSIVETLLKNGTFIRGSCDQSPSFLHSQSVYIVLKGSVRF
CCCCHHHHHHHHCCCCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCCEEEEEECCEEE
MDTRLPEGSKTVALWEKGDVFPIDEKGGLYLSPFISVNATSDILILNIPYYIFKKMMSYH
EECCCCCCCCEEEEEECCCEEEECCCCCEEECCEEEECCCCCEEEEECCHHHHHHHHHHC
PQLQMNFLAMLQQNVFCSYQLFLRYLHTSQDENAEPGS
CCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MNQCDYLLFLKQLPMFNEVPLSIVETLLKNGTFIRGSCDQSPSFLHSQSVYIVLKGSVRF
CCCCHHHHHHHHCCCCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCCEEEEEECCEEE
MDTRLPEGSKTVALWEKGDVFPIDEKGGLYLSPFISVNATSDILILNIPYYIFKKMMSYH
EECCCCCCCCEEEEEECCCEEEECCCCCEEECCEEEECCCCCEEEEECCHHHHHHHHHHC
PQLQMNFLAMLQQNVFCSYQLFLRYLHTSQDENAEPGS
CCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377