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The map label for this gene is gerBC

Identifier: 16080635

GI number: 16080635

Start: 3691372

End: 3692496

Strand: Direct

Name: gerBC

Synonym: BSU35820

Alternate gene names: 16080635

Gene position: 3691372-3692496 (Clockwise)

Preceding gene: 255767774

Following gene: 255767776

Centisome position: 87.56

GC content: 43.11

Gene sequence:

>1125_bases
ATGAAAACAGCATCAAAATTCTCCGTCATGTTTTTTATGCTGCTGGCCCTCTGCGGCTGCTGGGATGTCAAAGATATCGA
GCAACTATCCTTCGCCAGAGGGCTGGCGATCGATGAGACAAATGATCACCAGTACAAACTGACGTATCAAAATCTTCTTC
CCCAAAGCGAAGACAGCCAAGCATCCGGAAAACCCGAATTTGTTAATGTAACGTCCCACGGGAAAACGATTCTGGAAGCA
GTCAGTGATGTATCCATCAAGGACCCTCCTGTTTATAGCGATCATTTAAAAGTGATCCTTCTGGGAGAAAAACTGATGAG
GAATCAAAATGTAGACCAAGTCCTCAACCACTTTATCCGGGATGATGAGCTGCGGCGAAGCAGCTATTTGATGGCAGCCA
GAGGGAATGCAGCTGATGTTTTCACAAAAGGAAACCCCAATCAGCAGCAGCCGATGCCCTCCGAAAAACTGATTGATTTG
ACAACTCACAGCGGATATAACGGTAAGATTATGATACCGCTGCGCATCGGAAGAGCTTCTGTCTACTCTCAGAACGGGTA
CAGTTATCTTATTCAAGCCGTGAAAAACGAAAAGGGAAAAGCCAAGTATGACGGAGCAGGCATTATCAAAAGGGGCAGCA
ATAAACTCGTTGGGTTTCTTTCAGCTGATGAAACCCAAACACTGTCATGGGTCATGGGGACGATCCAAGGCGGTGTCATG
CCGACGACAGATAAAGGACATCCGATTACGTTTGAAATTAAAAAGTCGAAAACGAAAATTAAGCCCGTCATTGAAAACGG
AAAGCCTGTCTTTCATATTTCTGTTAAAACGAAGGGCATCCTGACAGAAGACCAAAACCCGAATGAAAACTCCTTTAGCA
AAAGTTATTTGCACAGGCTGGAAAACATTTTTGAAAAAAAGCTTGAACGAGATGTAAAGCAGGTGATGGATAAACTGCAG
CACGAGTATAAAACCGATCCGGTCTTTTTATCAGACCACATAAGGATTCAACACCCTGACTACTGGAATAAAGTAAAAGG
GCATTGGGATGAAATATTTTCTGAGACTGATTTTAAGTACGATATTTCTTTTAAAATCATTAACTTTGGCACGGTGGGAA
AGTAA

Upstream 100 bases:

>100_bases
GGACGCTTCTTGGATATGCTTTCTTAATTGTGATTACAATTCCATTCTTCGTCTGGTTTTTAAGCTGGATACAGAAAAAA
ATAGGGAGGGGGCAGCTGCA

Downstream 100 bases:

>100_bases
GCAATCAAAAGGGTGCGCATGATCGCGCACCCTTTTTTATGTTCCGACAGTCTGCTGTTTTCCGGCCGCTCCTCCCTGTC
CGTTTTTGTCCCGTAAATCC

Product: lipoprotein component of the germination receptor B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 374; Mature: 374

Protein sequence:

>374_residues
MKTASKFSVMFFMLLALCGCWDVKDIEQLSFARGLAIDETNDHQYKLTYQNLLPQSEDSQASGKPEFVNVTSHGKTILEA
VSDVSIKDPPVYSDHLKVILLGEKLMRNQNVDQVLNHFIRDDELRRSSYLMAARGNAADVFTKGNPNQQQPMPSEKLIDL
TTHSGYNGKIMIPLRIGRASVYSQNGYSYLIQAVKNEKGKAKYDGAGIIKRGSNKLVGFLSADETQTLSWVMGTIQGGVM
PTTDKGHPITFEIKKSKTKIKPVIENGKPVFHISVKTKGILTEDQNPNENSFSKSYLHRLENIFEKKLERDVKQVMDKLQ
HEYKTDPVFLSDHIRIQHPDYWNKVKGHWDEIFSETDFKYDISFKIINFGTVGK

Sequences:

>Translated_374_residues
MKTASKFSVMFFMLLALCGCWDVKDIEQLSFARGLAIDETNDHQYKLTYQNLLPQSEDSQASGKPEFVNVTSHGKTILEA
VSDVSIKDPPVYSDHLKVILLGEKLMRNQNVDQVLNHFIRDDELRRSSYLMAARGNAADVFTKGNPNQQQPMPSEKLIDL
TTHSGYNGKIMIPLRIGRASVYSQNGYSYLIQAVKNEKGKAKYDGAGIIKRGSNKLVGFLSADETQTLSWVMGTIQGGVM
PTTDKGHPITFEIKKSKTKIKPVIENGKPVFHISVKTKGILTEDQNPNENSFSKSYLHRLENIFEKKLERDVKQVMDKLQ
HEYKTDPVFLSDHIRIQHPDYWNKVKGHWDEIFSETDFKYDISFKIINFGTVGK
>Mature_374_residues
MKTASKFSVMFFMLLALCGCWDVKDIEQLSFARGLAIDETNDHQYKLTYQNLLPQSEDSQASGKPEFVNVTSHGKTILEA
VSDVSIKDPPVYSDHLKVILLGEKLMRNQNVDQVLNHFIRDDELRRSSYLMAARGNAADVFTKGNPNQQQPMPSEKLIDL
TTHSGYNGKIMIPLRIGRASVYSQNGYSYLIQAVKNEKGKAKYDGAGIIKRGSNKLVGFLSADETQTLSWVMGTIQGGVM
PTTDKGHPITFEIKKSKTKIKPVIENGKPVFHISVKTKGILTEDQNPNENSFSKSYLHRLENIFEKKLERDVKQVMDKLQ
HEYKTDPVFLSDHIRIQHPDYWNKVKGHWDEIFSETDFKYDISFKIINFGTVGK

Specific function: Involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AGFK). Cannot stimulate germination in the absence of gerD and gerK gene products (fructose and glucose receptors respectively)

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gerABKC lipoprotein family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): GERBC_BACSU (P39571)

Other databases:

- EMBL:   L16960
- EMBL:   AL009126
- PIR:   I39857
- RefSeq:   NP_391463.1
- PDB:   3N54
- PDBsum:   3N54
- ProteinModelPortal:   P39571
- SMR:   P39571
- EnsemblBacteria:   EBBACT00000002516
- GeneID:   936819
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU35820
- NMPDR:   fig|224308.1.peg.3589
- GenoList:   BSU35820
- GeneTree:   EBGT00050000001336
- HOGENOM:   HBG338371
- OMA:   HFIRDDE
- ProtClustDB:   CLSK887982
- BioCyc:   BSUB:BSU35820-MONOMER
- InterPro:   IPR008844
- TIGRFAMs:   TIGR02887

Pfam domain/function: PF05504 Spore_GerAC

EC number: NA

Molecular weight: Translated: 42469; Mature: 42469

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTASKFSVMFFMLLALCGCWDVKDIEQLSFARGLAIDETNDHQYKLTYQNLLPQSEDSQ
CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEECCCCCEEEEEHHHCCCCCCCCC
ASGKPEFVNVTSHGKTILEAVSDVSIKDPPVYSDHLKVILLGEKLMRNQNVDQVLNHFIR
CCCCCCEEEECCCCHHHHHHHHCCCCCCCCCCCCCEEEEEECHHHHCCCCHHHHHHHHHC
DDELRRSSYLMAARGNAADVFTKGNPNQQQPMPSEKLIDLTTHSGYNGKIMIPLRIGRAS
CCHHHHHHEEEEECCCCEEEEECCCCCCCCCCCHHHEEEEEECCCCCCEEEEEEEECCEE
VYSQNGYSYLIQAVKNEKGKAKYDGAGIIKRGSNKLVGFLSADETQTLSWVMGTIQGGVM
EECCCCHHHHHHHHHCCCCCCEECCCCEEECCCCCEEEEEECCCCHHHHHHHHHHCCCEE
PTTDKGHPITFEIKKSKTKIKPVIENGKPVFHISVKTKGILTEDQNPNENSFSKSYLHRL
CCCCCCCEEEEEEECCCCEECHHCCCCCEEEEEEEEECEEEECCCCCCCCHHHHHHHHHH
ENIFEKKLERDVKQVMDKLQHEYKTDPVFLSDHIRIQHPDYWNKVKGHWDEIFSETDFKY
HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEEECCCHHHHHCCHHHHHHCCCCCEE
DISFKIINFGTVGK
EEEEEEEECCCCCC
>Mature Secondary Structure
MKTASKFSVMFFMLLALCGCWDVKDIEQLSFARGLAIDETNDHQYKLTYQNLLPQSEDSQ
CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEECCCCCEEEEEHHHCCCCCCCCC
ASGKPEFVNVTSHGKTILEAVSDVSIKDPPVYSDHLKVILLGEKLMRNQNVDQVLNHFIR
CCCCCCEEEECCCCHHHHHHHHCCCCCCCCCCCCCEEEEEECHHHHCCCCHHHHHHHHHC
DDELRRSSYLMAARGNAADVFTKGNPNQQQPMPSEKLIDLTTHSGYNGKIMIPLRIGRAS
CCHHHHHHEEEEECCCCEEEEECCCCCCCCCCCHHHEEEEEECCCCCCEEEEEEEECCEE
VYSQNGYSYLIQAVKNEKGKAKYDGAGIIKRGSNKLVGFLSADETQTLSWVMGTIQGGVM
EECCCCHHHHHHHHHCCCCCCEECCCCEEECCCCCEEEEEECCCCHHHHHHHHHHCCCEE
PTTDKGHPITFEIKKSKTKIKPVIENGKPVFHISVKTKGILTEDQNPNENSFSKSYLHRL
CCCCCCCEEEEEEECCCCEECHHCCCCCEEEEEEEEECEEEECCCCCCCCHHHHHHHHHH
ENIFEKKLERDVKQVMDKLQHEYKTDPVFLSDHIRIQHPDYWNKVKGHWDEIFSETDFKY
HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEEECCCHHHHHCCHHHHHHCCCCCEE
DISFKIINFGTVGK
EEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8012571; 9384377