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The map label for this gene is yvdD

Identifier: 16080517

GI number: 16080517

Start: 3558940

End: 3559515

Strand: Reverse

Name: yvdD

Synonym: BSU34640

Alternate gene names: 16080517

Gene position: 3559515-3558940 (Counterclockwise)

Preceding gene: 16080519

Following gene: 16080516

Centisome position: 84.44

GC content: 46.35

Gene sequence:

>576_bases
ATGAAAACCATTTGTGTATTTGCGGGATCAAACCCTGGGGGAAATGAAGCGTATAAAAGAAAAGCGGCAGAGCTTGGCGT
GTATATGGCTGAGCAGGGAATCGGCCTTGTCTATGGGGGCTCCCGCGTAGGCTTGATGGGCACGATTGCTGACGCGATTA
TGGAAAACGGCGGAACTGCAATCGGGGTCATGCCGAGCGGTTTGTTCAGCGGGGAGGTTGTCCATCAGAATCTGACTGAG
CTGATTGAAGTAAACGGGATGCATGAACGAAAGGCTAAAATGAGCGAGCTGGCGGACGGCTTTATCTCGATGCCGGGCGG
CTTCGGTACATATGAAGAATTATTTGAAGTGCTGTGCTGGGCACAGATCGGCATCCACCAAAAGCCAATTGGACTGTACA
ATGTAAACGGATATTTTGAACCAATGATGAAAATGGTGAAATACAGCATTCAAGAAGGGTTTTCTAACGAATCGCACCTA
AAACTGATTCACAGCTCGTCACGGCCGGATGAGTTAATTGAGCAAATGCAAAATTATTCTTATCCGATTTTAGAAAAAAA
GTGGACAGAAATTTAA

Upstream 100 bases:

>100_bases
TTCTTTATGTATTTCATATTGATATTATCACATGAAGATGGGACAATATATAGTGTGTTTTTGAATGTTTAACACGATAT
ATAGATGCGGAGATGACAAG

Downstream 100 bases:

>100_bases
AAAAGAGATTTTCTGATGGAAGTGGAGAGAATGAGTCTGCCACCTAGCGTATGAATCCATGAAAAATCGAGTGTTTTTAA
CAAAGTGAGGTTTCCTTAAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MKTICVFAGSNPGGNEAYKRKAAELGVYMAEQGIGLVYGGSRVGLMGTIADAIMENGGTAIGVMPSGLFSGEVVHQNLTE
LIEVNGMHERKAKMSELADGFISMPGGFGTYEELFEVLCWAQIGIHQKPIGLYNVNGYFEPMMKMVKYSIQEGFSNESHL
KLIHSSSRPDELIEQMQNYSYPILEKKWTEI

Sequences:

>Translated_191_residues
MKTICVFAGSNPGGNEAYKRKAAELGVYMAEQGIGLVYGGSRVGLMGTIADAIMENGGTAIGVMPSGLFSGEVVHQNLTE
LIEVNGMHERKAKMSELADGFISMPGGFGTYEELFEVLCWAQIGIHQKPIGLYNVNGYFEPMMKMVKYSIQEGFSNESHL
KLIHSSSRPDELIEQMQNYSYPILEKKWTEI
>Mature_191_residues
MKTICVFAGSNPGGNEAYKRKAAELGVYMAEQGIGLVYGGSRVGLMGTIADAIMENGGTAIGVMPSGLFSGEVVHQNLTE
LIEVNGMHERKAKMSELADGFISMPGGFGTYEELFEVLCWAQIGIHQKPIGLYNVNGYFEPMMKMVKYSIQEGFSNESHL
KLIHSSSRPDELIEQMQNYSYPILEKKWTEI

Specific function: Unknown

COG id: COG1611

COG function: function code R; Predicted Rossmann fold nucleotide-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LOG family

Homologues:

Organism=Saccharomyces cerevisiae, GI6322406, Length=207, Percent_Identity=36.231884057971, Blast_Score=142, Evalue=5e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YVDD_BACSU (O06986)

Other databases:

- EMBL:   Z94043
- EMBL:   AL009126
- PIR:   D70033
- RefSeq:   NP_391344.1
- PDB:   1T35
- PDBsum:   1T35
- ProteinModelPortal:   O06986
- SMR:   O06986
- EnsemblBacteria:   EBBACT00000003466
- GeneID:   936504
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU34640
- NMPDR:   fig|224308.1.peg.3470
- GenoList:   BSU34640
- GeneTree:   EBGT00050000002399
- HOGENOM:   HBG437583
- OMA:   WTWGQLG
- PhylomeDB:   O06986
- ProtClustDB:   CLSK2460961
- BioCyc:   BSUB:BSU34640-MONOMER
- InterPro:   IPR005269
- TIGRFAMs:   TIGR00730

Pfam domain/function: PF03641 Lysine_decarbox

EC number: NA

Molecular weight: Translated: 21055; Mature: 21055

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
6.3 %Met     (Translated Protein)
7.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
6.3 %Met     (Mature Protein)
7.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTICVFAGSNPGGNEAYKRKAAELGVYMAEQGIGLVYGGSRVGLMGTIADAIMENGGTA
CCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHCCCCE
IGVMPSGLFSGEVVHQNLTELIEVNGMHERKAKMSELADGFISMPGGFGTYEELFEVLCW
EEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
AQIGIHQKPIGLYNVNGYFEPMMKMVKYSIQEGFSNESHLKLIHSSSRPDELIEQMQNYS
HHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHCC
YPILEKKWTEI
CCCHHHHCCCC
>Mature Secondary Structure
MKTICVFAGSNPGGNEAYKRKAAELGVYMAEQGIGLVYGGSRVGLMGTIADAIMENGGTA
CCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHCCCCE
IGVMPSGLFSGEVVHQNLTELIEVNGMHERKAKMSELADGFISMPGGFGTYEELFEVLCW
EEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
AQIGIHQKPIGLYNVNGYFEPMMKMVKYSIQEGFSNESHLKLIHSSSRPDELIEQMQNYS
HHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHCC
YPILEKKWTEI
CCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377