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The map label for this gene is cycB

Identifier: 16080469

GI number: 16080469

Start: 3507253

End: 3508518

Strand: Reverse

Name: cycB

Synonym: BSU34160

Alternate gene names: 16080469

Gene position: 3508518-3507253 (Counterclockwise)

Preceding gene: 16080470

Following gene: 16080468

Centisome position: 83.23

GC content: 44.71

Gene sequence:

>1266_bases
ATGAAAATGGCAAAAAAGTGTTCCGTATTCATGCTCTGCGCAGCTGTCAGTTTATCCTTGGCGGCTTGCGGCCCAAAGGA
AAGCAGCAGCGCCAAATCGAGTTCAAAAGGGTCAGAGCTTGTTGTATGGGAGGATAAAGAAAAGAGCAACGGCATTAAAG
ACGCTGTGGCTGCATTTGAAAAAGAGCATGATGTGAAGGTCAAAGTCGTTGAAAAACCGTATGCCAAGCAGATTGAAGAT
TTGCGAATGGATGGACCGGCCGGCACAGGCCCTGACGTGTTAACAATGCCAGGGGACCAAATCGGAACCGCTGTCACGGA
AGGATTACTCAAGGAATTACATGTCAAAAAAGACGTTCAATCACTTTATACTGACGCTTCCATTCAGTCTCAAATGGTAG
ATCAAAAGCTTTATGGACTGCCAAAAGCGGTCGAAACGACTGTGCTTTTTTACAACAAAGATCTCATCACAGAAAAGGAA
TTGCCCAAAACGCTGGAAGAGTGGTACGACTATTCCAAAAAGACTGCTGACGGCAGCAAATTTGGCTTTTTAGCCCTATT
CGATCAAATTTATTATGCAGAAAGTGTGATGAGCGGATATGGCGGATACATTTTTGGAAAGGCCAAAGATGGGAGCTATA
ACCCGTCAGACATTGGAATCAATAATGAAGGAGCTGTCAAAGGTGCGGCGCTGATTCAGAAGTTTTACAAAGATGGCCTG
TTCCCGGCTGGCATTATTGGAGAACAAGGGATTAACGTGTTGGAATCGCTGTTCACAGAAGGAAAAGCCGCCGCAATTAT
TTCTGGTCCATGGAATGTAGAAGCCTTTTCGAATGCAGGAATCAATTATGGCATTACGAAACTGCCGAAGCTGGAAAATG
GGAAAAACATGAGCTCCTTTATCGGCGTCAAAAGCTACAACGTCAGTGCATTTTCAAAGAATGAAGAGCTGGCGCAAGAA
TTAGCCGTTTTCCTGGCAAATGAAAAAAATTCTAAAACACGATATGAAGAAACGAAAGAAGTTCCTGCTGTGAAATCCCT
AGCCAATGACCCGGCTATTATGAAAAGCGAGGCGGCACGGGCTGTTACTGAACAATCCCGTTTCTCAGAGCCAACACCAA
ATATTCCGGAAATGAATGAAATATGGACGCCGGCTGATTCAGCATTACAGACGGTTGCAACAGGGAAGGCAGATCCGAAA
CAAGCATTGGATCAAGCAGCTGAAACGGCCAAAGGACAAATTAAGGCAAAGCACAGCGGAAAATAA

Upstream 100 bases:

>100_bases
AAAATTTACTCTATGAAGTAAATAGTTTGTTTACACATTTTCTCAGGCATGCTATATTATCTTTAAAGCGCTTTCATTCC
TACCGAAAGGGTGACAATCA

Downstream 100 bases:

>100_bases
AGAGAAAGCTAGATTTGTATTGTAAGAGAGGTGAAAACGGTGCAGCATCGTCAAGTCGCTTTGTTGCTTTCTATCATTCC
GGGACTCGGGCAATTTTATA

Product: cyclodextrin-binding lipoprotein

Products: ADP; phosphate; maltose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 421; Mature: 421

Protein sequence:

>421_residues
MKMAKKCSVFMLCAAVSLSLAACGPKESSSAKSSSKGSELVVWEDKEKSNGIKDAVAAFEKEHDVKVKVVEKPYAKQIED
LRMDGPAGTGPDVLTMPGDQIGTAVTEGLLKELHVKKDVQSLYTDASIQSQMVDQKLYGLPKAVETTVLFYNKDLITEKE
LPKTLEEWYDYSKKTADGSKFGFLALFDQIYYAESVMSGYGGYIFGKAKDGSYNPSDIGINNEGAVKGAALIQKFYKDGL
FPAGIIGEQGINVLESLFTEGKAAAIISGPWNVEAFSNAGINYGITKLPKLENGKNMSSFIGVKSYNVSAFSKNEELAQE
LAVFLANEKNSKTRYEETKEVPAVKSLANDPAIMKSEAARAVTEQSRFSEPTPNIPEMNEIWTPADSALQTVATGKADPK
QALDQAAETAKGQIKAKHSGK

Sequences:

>Translated_421_residues
MKMAKKCSVFMLCAAVSLSLAACGPKESSSAKSSSKGSELVVWEDKEKSNGIKDAVAAFEKEHDVKVKVVEKPYAKQIED
LRMDGPAGTGPDVLTMPGDQIGTAVTEGLLKELHVKKDVQSLYTDASIQSQMVDQKLYGLPKAVETTVLFYNKDLITEKE
LPKTLEEWYDYSKKTADGSKFGFLALFDQIYYAESVMSGYGGYIFGKAKDGSYNPSDIGINNEGAVKGAALIQKFYKDGL
FPAGIIGEQGINVLESLFTEGKAAAIISGPWNVEAFSNAGINYGITKLPKLENGKNMSSFIGVKSYNVSAFSKNEELAQE
LAVFLANEKNSKTRYEETKEVPAVKSLANDPAIMKSEAARAVTEQSRFSEPTPNIPEMNEIWTPADSALQTVATGKADPK
QALDQAAETAKGQIKAKHSGK
>Mature_421_residues
MKMAKKCSVFMLCAAVSLSLAACGPKESSSAKSSSKGSELVVWEDKEKSNGIKDAVAAFEKEHDVKVKVVEKPYAKQIED
LRMDGPAGTGPDVLTMPGDQIGTAVTEGLLKELHVKKDVQSLYTDASIQSQMVDQKLYGLPKAVETTVLFYNKDLITEKE
LPKTLEEWYDYSKKTADGSKFGFLALFDQIYYAESVMSGYGGYIFGKAKDGSYNPSDIGINNEGAVKGAALIQKFYKDGL
FPAGIIGEQGINVLESLFTEGKAAAIISGPWNVEAFSNAGINYGITKLPKLENGKNMSSFIGVKSYNVSAFSKNEELAQE
LAVFLANEKNSKTRYEETKEVPAVKSLANDPAIMKSEAARAVTEQSRFSEPTPNIPEMNEIWTPADSALQTVATGKADPK
QALDQAAETAKGQIKAKHSGK

Specific function: Binding protein for cyclodextrin; involved in its cellular uptake. Interacts with all natural cyclodextrins:alpha, beta and gamma

COG id: COG2182

COG function: function code G; Maltose-binding periplasmic proteins/domains

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family

Homologues:

Organism=Escherichia coli, GI1790466, Length=421, Percent_Identity=29.2161520190024, Blast_Score=145, Evalue=6e-36,

Paralogues:

None

Copy number: 660 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 720 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 240 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase,

Swissprot (AC and ID): CYCB_BACSU (O07009)

Other databases:

- EMBL:   Z94043
- EMBL:   AL009126
- PIR:   C70038
- RefSeq:   NP_391296.1
- ProteinModelPortal:   O07009
- SMR:   O07009
- EnsemblBacteria:   EBBACT00000003741
- GeneID:   936329
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU34160
- NMPDR:   fig|224308.1.peg.3422
- GenoList:   BSU34160
- GeneTree:   EBGT00050000001718
- HOGENOM:   HBG727666
- OMA:   SEFFANK
- PhylomeDB:   O07009
- ProtClustDB:   CLSK2300071
- BioCyc:   BSUB:BSU34160-MONOMER
- InterPro:   IPR006060
- InterPro:   IPR006059
- PRINTS:   PR00181

Pfam domain/function: PF01547 SBP_bac_1

EC number: NA

Molecular weight: Translated: 45543; Mature: 45543

Theoretical pI: Translated: 5.42; Mature: 5.42

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS01037 SBP_BACTERIAL_1; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKMAKKCSVFMLCAAVSLSLAACGPKESSSAKSSSKGSELVVWEDKEKSNGIKDAVAAFE
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHH
KEHDVKVKVVEKPYAKQIEDLRMDGPAGTGPDVLTMPGDQIGTAVTEGLLKELHVKKDVQ
CCCCCEEEEECCHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHH
SLYTDASIQSQMVDQKLYGLPKAVETTVLFYNKDLITEKELPKTLEEWYDYSKKTADGSK
HHHHHHHHHHHHHHHHHHCCCHHHHHEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCC
FGFLALFDQIYYAESVMSGYGGYIFGKAKDGSYNPSDIGINNEGAVKGAALIQKFYKDGL
HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
FPAGIIGEQGINVLESLFTEGKAAAIISGPWNVEAFSNAGINYGITKLPKLENGKNMSSF
CCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHCCCCCCCCCCCCCCCCCCCCHHHH
IGVKSYNVSAFSKNEELAQELAVFLANEKNSKTRYEETKEVPAVKSLANDPAIMKSEAAR
HCEECCCCHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHCCCCHHHHHHHHH
AVTEQSRFSEPTPNIPEMNEIWTPADSALQTVATGKADPKQALDQAAETAKGQIKAKHSG
HHHHHHHCCCCCCCCCCCHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEECCCC
K
C
>Mature Secondary Structure
MKMAKKCSVFMLCAAVSLSLAACGPKESSSAKSSSKGSELVVWEDKEKSNGIKDAVAAFE
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHH
KEHDVKVKVVEKPYAKQIEDLRMDGPAGTGPDVLTMPGDQIGTAVTEGLLKELHVKKDVQ
CCCCCEEEEECCHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHH
SLYTDASIQSQMVDQKLYGLPKAVETTVLFYNKDLITEKELPKTLEEWYDYSKKTADGSK
HHHHHHHHHHHHHHHHHHCCCHHHHHEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCC
FGFLALFDQIYYAESVMSGYGGYIFGKAKDGSYNPSDIGINNEGAVKGAALIQKFYKDGL
HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
FPAGIIGEQGINVLESLFTEGKAAAIISGPWNVEAFSNAGINYGITKLPKLENGKNMSSF
CCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHCCCCCCCCCCCCCCCCCCCCHHHH
IGVKSYNVSAFSKNEELAQELAVFLANEKNSKTRYEETKEVPAVKSLANDPAIMKSEAAR
HCEECCCCHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHCCCCHHHHHHHHH
AVTEQSRFSEPTPNIPEMNEIWTPADSALQTVATGKADPKQALDQAAETAKGQIKAKHSG
HHHHHHHCCCCCCCCCCCHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEECCCC
K
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; maltose [Periplasm]; H2O [C]

Specific reaction: ATP + maltose [Periplasm] + H2O = ADP + phosphate + maltose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377