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The map label for this gene is yvzC

Identifier: 16080418

GI number: 16080418

Start: 3456282

End: 3456515

Strand: Reverse

Name: yvzC

Synonym: BSU33650

Alternate gene names: 16080418

Gene position: 3456515-3456282 (Counterclockwise)

Preceding gene: 16080423

Following gene: 16080416

Centisome position: 81.99

GC content: 40.17

Gene sequence:

>234_bases
GTGCCAGTAGAAAAGATACAGATTAGACGTGATTATGTCTTGCAGTATATGGTTAATAACGATTATTCCCTTAATCAGCT
TGCGCTGGAAATCGGAGTCTCACCCGCCACACTGAGCCGCGTGCTGAATGGAGAAAGAAGGCCGGGGCAGCTTGTGATTG
GTAAAATGCTTCACTATTTTAATTTGAAATTTGAGGATCTTTTTTACTATGATTTCGTTGACAAAAGTCAATAA

Upstream 100 bases:

>100_bases
TAAAGGGAATAGGTAGACTGGAAATGTATTGACAAAAGTTAACATAAGCCGTAATGTAAAAGTATAGAAAAAAGTTTTTC
AGGAATGGAAGGTGAGGAAA

Downstream 100 bases:

>100_bases
AGTAACAAAAAACGCAAGGAAGCCAAGCGTTTTCTATTCCTATGAATGATGTGTCAGCACAAACCCTGTCACCAGCTCAT
TGCACGTTTTCCATTGTTTT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 77; Mature: 76

Protein sequence:

>77_residues
MPVEKIQIRRDYVLQYMVNNDYSLNQLALEIGVSPATLSRVLNGERRPGQLVIGKMLHYFNLKFEDLFYYDFVDKSQ

Sequences:

>Translated_77_residues
MPVEKIQIRRDYVLQYMVNNDYSLNQLALEIGVSPATLSRVLNGERRPGQLVIGKMLHYFNLKFEDLFYYDFVDKSQ
>Mature_76_residues
PVEKIQIRRDYVLQYMVNNDYSLNQLALEIGVSPATLSRVLNGERRPGQLVIGKMLHYFNLKFEDLFYYDFVDKSQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YVZC_BACSU (O32235)

Other databases:

- EMBL:   AL009126
- PIR:   G70049
- RefSeq:   NP_391245.1
- ProteinModelPortal:   O32235
- SMR:   O32235
- EnsemblBacteria:   EBBACT00000003310
- GeneID:   936178
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU33650
- NMPDR:   fig|224308.1.peg.3371
- GenoList:   BSU33650
- GeneTree:   EBGT00050000002153
- HOGENOM:   HBG338320
- OMA:   QLVIGKM
- ProtClustDB:   CLSK887885
- BioCyc:   BSUB:BSU33650-MONOMER
- GO:   GO:0005737
- GO:   GO:0006350
- InterPro:   IPR001387
- InterPro:   IPR010982
- SMART:   SM00530

Pfam domain/function: PF01381 HTH_3; SSF47413 Lambda_like_DNA

EC number: NA

Molecular weight: Translated: 9103; Mature: 8971

Theoretical pI: Translated: 7.51; Mature: 7.51

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVEKIQIRRDYVLQYMVNNDYSLNQLALEIGVSPATLSRVLNGERRPGQLVIGKMLHYF
CCCCHHHHHHHHHHHHHCCCCCCHHHHHEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHH
NLKFEDLFYYDFVDKSQ
CCCCHHEEEEEECCCCC
>Mature Secondary Structure 
PVEKIQIRRDYVLQYMVNNDYSLNQLALEIGVSPATLSRVLNGERRPGQLVIGKMLHYF
CCCHHHHHHHHHHHHHCCCCCCHHHHHEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHH
NLKFEDLFYYDFVDKSQ
CCCCHHEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377