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The map label for this gene is opuBD

Identifier: 16080423

GI number: 16080423

Start: 3459806

End: 3460486

Strand: Reverse

Name: opuBD

Synonym: BSU33700

Alternate gene names: 16080423

Gene position: 3460486-3459806 (Counterclockwise)

Preceding gene: 16080424

Following gene: 16080418

Centisome position: 82.09

GC content: 51.25

Gene sequence:

>681_bases
ATGAACGTGCTTGAACAGTTAATGACGTATTACGCGCAGAATGGCAGTTACGTCATGGATGAATTCGGCCGCCACTTTCT
CATGTCGGCTTACGGCGTTTTATTTGCCGCTGTCGTCGGGGTTCCGGCCGGAATCCTCATCGCGCATTTTCGCCGTTTGT
CAGCCTGGGTGTTTGCCGTAACAAACGTTATTCAAACAATCCCGGCGCTCGCTATGCTGGCCGTCTTAATGCTTGTTATG
GGGCTCGGCGCAAATACCGTGATTCTATCATTATTTCTGTATTCCCTGCTGCCGATTATTCGAAACACGTACACAGGCAT
TATCAGTATTGAACATGCCTACTTAGAATCTGGAAAAGCAATGGGCATGACGAAATTCCAAGTGCTCAGAATGGTTGAGC
TCCCGCTCGCACTTTCTGTCATTATGGCGGGCCTTCGCACGGCTCTCGTCATTGCCATCGGAATTACAGCGATCGGCACA
TTTGTCGGTGCCGGAGGCCTTGGGGACATGATCGTACGCGGCTCAAACGCAACAAACGGAACTGCGATTATTCTAGCCGG
AGCGATACCAACTGCGGTGATGGCGGTAGGGGCGGATTTGCTCATGGCTTGGCTGGAGCGGGCATTAAGTCCGGTGAAGA
AAAAAAGAACCGGGGCGAAACATGTTCAATCAGCTGCATAG

Upstream 100 bases:

>100_bases
AACTATGAAGTCGACGGCAATCTCAAAGAACCGTCTGTCGTTGCCAAGGAATATTTAGAAAAACATCGCTATTTCGAATC
GTGAAAGGGGGAAGAGGTCA

Downstream 100 bases:

>100_bases
AATAGAAAAAGAGGCTGGAGTCCAGCCTCTTTTTTCTCTTTAAATCGTAAACTGACCCATCTTCTCATTAAGCTCATTGG
CCAGCTGCTCAAGCTCTTCA

Product: choline ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MNVLEQLMTYYAQNGSYVMDEFGRHFLMSAYGVLFAAVVGVPAGILIAHFRRLSAWVFAVTNVIQTIPALAMLAVLMLVM
GLGANTVILSLFLYSLLPIIRNTYTGIISIEHAYLESGKAMGMTKFQVLRMVELPLALSVIMAGLRTALVIAIGITAIGT
FVGAGGLGDMIVRGSNATNGTAIILAGAIPTAVMAVGADLLMAWLERALSPVKKKRTGAKHVQSAA

Sequences:

>Translated_226_residues
MNVLEQLMTYYAQNGSYVMDEFGRHFLMSAYGVLFAAVVGVPAGILIAHFRRLSAWVFAVTNVIQTIPALAMLAVLMLVM
GLGANTVILSLFLYSLLPIIRNTYTGIISIEHAYLESGKAMGMTKFQVLRMVELPLALSVIMAGLRTALVIAIGITAIGT
FVGAGGLGDMIVRGSNATNGTAIILAGAIPTAVMAVGADLLMAWLERALSPVKKKRTGAKHVQSAA
>Mature_226_residues
MNVLEQLMTYYAQNGSYVMDEFGRHFLMSAYGVLFAAVVGVPAGILIAHFRRLSAWVFAVTNVIQTIPALAMLAVLMLVM
GLGANTVILSLFLYSLLPIIRNTYTGIISIEHAYLESGKAMGMTKFQVLRMVELPLALSVIMAGLRTALVIAIGITAIGT
FVGAGGLGDMIVRGSNATNGTAIILAGAIPTAVMAVGADLLMAWLERALSPVKKKRTGAKHVQSAA

Specific function: Involved in a high affinity multicomponent binding- protein-dependent transport system for choline; probably responsible for the translocation of the substrate across the membrane

COG id: COG1174

COG function: function code E; ABC-type proline/glycine betaine transport systems, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain

Homologues:

Organism=Escherichia coli, GI1788449, Length=191, Percent_Identity=40.3141361256544, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1788451, Length=227, Percent_Identity=33.920704845815, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1789033, Length=140, Percent_Identity=32.8571428571429, Blast_Score=85, Evalue=5e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): OPUBD_BACSU (P39775)

Other databases:

- EMBL:   U38418
- EMBL:   AF008930
- EMBL:   AL009126
- EMBL:   M99263
- PIR:   B69670
- RefSeq:   NP_391250.1
- ProteinModelPortal:   P39775
- SMR:   P39775
- EnsemblBacteria:   EBBACT00000000977
- GeneID:   936226
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU33700
- NMPDR:   fig|224308.1.peg.3376
- GenoList:   BSU33700
- GeneTree:   EBGT00070000031878
- HOGENOM:   HBG592565
- OMA:   ADLLMAW
- PhylomeDB:   P39775
- ProtClustDB:   CLSK885986
- BioCyc:   BSUB:BSU33700-MONOMER
- InterPro:   IPR000515

Pfam domain/function: PF00528 BPD_transp_1

EC number: NA

Molecular weight: Translated: 23928; Mature: 23928

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x11f884e0)-; HASH(0x1225ca7c)-; HASH(0xfda67b4)-; HASH(0x1244a6dc)-; HASH(0x1248eda4)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.2 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
6.2 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVLEQLMTYYAQNGSYVMDEFGRHFLMSAYGVLFAAVVGVPAGILIAHFRRLSAWVFAV
CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
TNVIQTIPALAMLAVLMLVMGLGANTVILSLFLYSLLPIIRNTYTGIISIEHAYLESGKA
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
MGMTKFQVLRMVELPLALSVIMAGLRTALVIAIGITAIGTFVGAGGLGDMIVRGSNATNG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHEECCCCCCC
TAIILAGAIPTAVMAVGADLLMAWLERALSPVKKKRTGAKHVQSAA
CEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
>Mature Secondary Structure
MNVLEQLMTYYAQNGSYVMDEFGRHFLMSAYGVLFAAVVGVPAGILIAHFRRLSAWVFAV
CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
TNVIQTIPALAMLAVLMLVMGLGANTVILSLFLYSLLPIIRNTYTGIISIEHAYLESGKA
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
MGMTKFQVLRMVELPLALSVIMAGLRTALVIAIGITAIGTFVGAGGLGDMIVRGSNATNG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHEECCCCCCC
TAIILAGAIPTAVMAVGADLLMAWLERALSPVKKKRTGAKHVQSAA
CEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7592481; 10216873; 9384377; 1400221