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The map label for this gene is smpB

Identifier: 16080413

GI number: 16080413

Start: 3451248

End: 3451718

Strand: Reverse

Name: smpB

Synonym: BSU33600

Alternate gene names: 16080413

Gene position: 3451718-3451248 (Counterclockwise)

Preceding gene: 16080414

Following gene: 16080412

Centisome position: 81.88

GC content: 45.22

Gene sequence:

>471_bases
ATGCCAAAAGGGTCAGGAAAAGTATTATCTCAAAATAAGAAAGCCAACCACGATTATTTTATAGAAGAAACCTATGAAAC
AGGCATCGTTCTGCAAGGAACCGAAATCAAATCGATTCGCGCCGGCCGCGTAAACCTTAAGGATTCCTTCGCCAAAATCG
AACGGGGAGAAGTGTTTCTCCACAATATGCACGTCAGCCCATATGAGCAGGGAAACCGCTATAACCACGATCCGCTCCGG
ACAAGAAAGCTGTTAATGCACCGCAAGGAGATTAATAAGCTGATCGGGTTAACAAAGGAAAAAGGCTATTCTCTCGTTCC
GCTGAAGCTGTATTTAAAAAACGGCTTTGCCAAAGTGCTTCTCGGCCTTGGAAAAGGGAAGAAGAACTATGACAAACGGG
AAGATCTGAAGCGCAAGGACGCGAAGCGGGAAATCGAAAGAGCGTTCAGAGACAGTCAAAAAGGCTTCTAA

Upstream 100 bases:

>100_bases
TTCGGAAACAGCTTTTCATTGTAGCGGTACGTGACATTTGGTAAAATAGAGCGTATCGCAAAAGGTGGACAGTTTTTCCT
TAGAGAGAGGAGGTTCTGGC

Downstream 100 bases:

>100_bases
AGGCATAGTGCTTGATTCGAAAATCAGGCCTGTGCTATACTGTGTTCACGATCAGATCACGACGCCATTCATTTGAAGGA
TTTGACAATTGAAAAGAGCC

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 155

Protein sequence:

>156_residues
MPKGSGKVLSQNKKANHDYFIEETYETGIVLQGTEIKSIRAGRVNLKDSFAKIERGEVFLHNMHVSPYEQGNRYNHDPLR
TRKLLMHRKEINKLIGLTKEKGYSLVPLKLYLKNGFAKVLLGLGKGKKNYDKREDLKRKDAKREIERAFRDSQKGF

Sequences:

>Translated_156_residues
MPKGSGKVLSQNKKANHDYFIEETYETGIVLQGTEIKSIRAGRVNLKDSFAKIERGEVFLHNMHVSPYEQGNRYNHDPLR
TRKLLMHRKEINKLIGLTKEKGYSLVPLKLYLKNGFAKVLLGLGKGKKNYDKREDLKRKDAKREIERAFRDSQKGF
>Mature_155_residues
PKGSGKVLSQNKKANHDYFIEETYETGIVLQGTEIKSIRAGRVNLKDSFAKIERGEVFLHNMHVSPYEQGNRYNHDPLRT
RKLLMHRKEINKLIGLTKEKGYSLVPLKLYLKNGFAKVLLGLGKGKKNYDKREDLKRKDAKREIERAFRDSQKGF

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes [H]

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family [H]

Homologues:

Organism=Escherichia coli, GI1788973, Length=153, Percent_Identity=39.8692810457516, Blast_Score=133, Evalue=6e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000037
- InterPro:   IPR020081
- ProDom:   PD004488 [H]

Pfam domain/function: PF01668 SmpB [H]

EC number: NA

Molecular weight: Translated: 18091; Mature: 17960

Theoretical pI: Translated: 10.64; Mature: 10.64

Prosite motif: PS01317 SSRP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKGSGKVLSQNKKANHDYFIEETYETGIVLQGTEIKSIRAGRVNLKDSFAKIERGEVFL
CCCCCCCEECCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCEEEE
HNMHVSPYEQGNRYNHDPLRTRKLLMHRKEINKLIGLTKEKGYSLVPLKLYLKNGFAKVL
EECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHCCHHHHH
LGLGKGKKNYDKREDLKRKDAKREIERAFRDSQKGF
HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PKGSGKVLSQNKKANHDYFIEETYETGIVLQGTEIKSIRAGRVNLKDSFAKIERGEVFL
CCCCCCEECCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCEEEE
HNMHVSPYEQGNRYNHDPLRTRKLLMHRKEINKLIGLTKEKGYSLVPLKLYLKNGFAKVL
EECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHCCHHHHH
LGLGKGKKNYDKREDLKRKDAKREIERAFRDSQKGF
HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA