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The map label for this gene is liaH

Identifier: 16080365

GI number: 16080365

Start: 3397846

End: 3398523

Strand: Reverse

Name: liaH

Synonym: BSU33120

Alternate gene names: 16080365

Gene position: 3398523-3397846 (Counterclockwise)

Preceding gene: 16080366

Following gene: 255767755

Centisome position: 80.62

GC content: 42.48

Gene sequence:

>678_bases
ATGGTATTAAAAAGAATCAGAGACATGTTTGTTGCGTCAGTTCATGAAGGACTTGATAAAATGGAGAATCCAAAGGTGAT
GCTGAATCAATATGTACGCGATATGGAAAGCGACATCGCAAAAGCAAAGCAAACAATTGTGAAACAGCACACGATTGCCT
ATCAATTTAAGAAAAAATATGAAGAAGCCGCTGAAGTGGCTGGCAAACGGAAAAATCAGGCACAGCTCGCATTTGACGCA
GGTGAAGAAGAACTGGCGAAAAAGGCGCTGACTGAAATGAAGTATTTAGAAGGGAAGGCGGCTGAGCATAAAGCTTCCTA
TGAACAGGCAAACAGTCAGCTGGCTGATCTGAAAGAGCAGCTGGCTGCACTTGAAACAAAGCTTCAGGACGTAAAGGATA
AAAAACAGGCGCTGATTGCGCGGGCAAATGCGGCGAAAGCTAAAGAGCATATGAATACGACATTTGACAAAATTGACAGT
GAAAGCGCGTATCGTGAATTTTTACGTATTGAAAATCGTATTGAAGAAATGGAAATCCGCGCGAATTATTCAAAGTCAGC
GGAAGCCGGCACAGAACTTACACGTAAAGAATTCGCAGACGATGTGGAAGCGGAGATTGAAAAAATGCGGACACTTTCAC
TGCAAAAATCAGACCAGACAAAAGCGGCAAATGAATAA

Upstream 100 bases:

>100_bases
ATCCTGAACCGGCTTCTGCTGCCTACCAATCTCACTTTGATGACGAATGGGAAGAATTTTTGAAGAAAAAATAATATCAA
TATATTAGGAGGAATCAGGT

Downstream 100 bases:

>100_bases
GCGGAACGGGGAAGGATTTGCGGTCAAGTCCTTCCCTTCCGCACGTATCAATTCGCAAGCTTTTCCTTTATAATAGAATG
AATGAGAAGGATGAAACCGA

Product: modulator of liaIHGFSR (yvqIHGFEC) operon expression

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MVLKRIRDMFVASVHEGLDKMENPKVMLNQYVRDMESDIAKAKQTIVKQHTIAYQFKKKYEEAAEVAGKRKNQAQLAFDA
GEEELAKKALTEMKYLEGKAAEHKASYEQANSQLADLKEQLAALETKLQDVKDKKQALIARANAAKAKEHMNTTFDKIDS
ESAYREFLRIENRIEEMEIRANYSKSAEAGTELTRKEFADDVEAEIEKMRTLSLQKSDQTKAANE

Sequences:

>Translated_225_residues
MVLKRIRDMFVASVHEGLDKMENPKVMLNQYVRDMESDIAKAKQTIVKQHTIAYQFKKKYEEAAEVAGKRKNQAQLAFDA
GEEELAKKALTEMKYLEGKAAEHKASYEQANSQLADLKEQLAALETKLQDVKDKKQALIARANAAKAKEHMNTTFDKIDS
ESAYREFLRIENRIEEMEIRANYSKSAEAGTELTRKEFADDVEAEIEKMRTLSLQKSDQTKAANE
>Mature_225_residues
MVLKRIRDMFVASVHEGLDKMENPKVMLNQYVRDMESDIAKAKQTIVKQHTIAYQFKKKYEEAAEVAGKRKNQAQLAFDA
GEEELAKKALTEMKYLEGKAAEHKASYEQANSQLADLKEQLAALETKLQDVKDKKQALIARANAAKAKEHMNTTFDKIDS
ESAYREFLRIENRIEEMEIRANYSKSAEAGTELTRKEFADDVEAEIEKMRTLSLQKSDQTKAANE

Specific function: The Phage Shock Protein (Psp) Operon (Pspabce) May Play A Significant Role In The Competition For Survival Under Nutrient- Or Energy-Limited Conditions. Pspa Has A Role As A Negative Regulator, Is Required For Efficient Translocation And Has An Unknown Fu

COG id: COG1842

COG function: function code KT; Phage shock protein A (IM30), suppresses sigma54-dependent transcription

Gene ontology:

Cell location: Inner Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PspA/IM30 family

Homologues:

Organism=Escherichia coli, GI2367118, Length=182, Percent_Identity=26.3736263736264, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): LIAH_BACSU (O32201)

Other databases:

- EMBL:   AJ223978
- EMBL:   AL009126
- PIR:   A70046
- RefSeq:   NP_391192.1
- ProteinModelPortal:   O32201
- EnsemblBacteria:   EBBACT00000002073
- GeneID:   938585
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU33120
- NMPDR:   fig|224308.1.peg.3318
- GenoList:   BSU33120
- GeneTree:   EBGT00050000001787
- HOGENOM:   HBG338308
- OMA:   DDKVKKY
- PhylomeDB:   O32201
- ProtClustDB:   CLSK887859
- BioCyc:   BSUB:BSU33120-MONOMER
- InterPro:   IPR007157

Pfam domain/function: PF04012 PspA_IM30

EC number: NA

Molecular weight: Translated: 25698; Mature: 25698

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLKRIRDMFVASVHEGLDKMENPKVMLNQYVRDMESDIAKAKQTIVKQHTIAYQFKKKY
CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EEAAEVAGKRKNQAQLAFDAGEEELAKKALTEMKYLEGKAAEHKASYEQANSQLADLKEQ
HHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
LAALETKLQDVKDKKQALIARANAAKAKEHMNTTFDKIDSESAYREFLRIENRIEEMEIR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
ANYSKSAEAGTELTRKEFADDVEAEIEKMRTLSLQKSDQTKAANE
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MVLKRIRDMFVASVHEGLDKMENPKVMLNQYVRDMESDIAKAKQTIVKQHTIAYQFKKKY
CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EEAAEVAGKRKNQAQLAFDAGEEELAKKALTEMKYLEGKAAEHKASYEQANSQLADLKEQ
HHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
LAALETKLQDVKDKKQALIARANAAKAKEHMNTTFDKIDSESAYREFLRIENRIEEMEIR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
ANYSKSAEAGTELTRKEFADDVEAEIEKMRTLSLQKSDQTKAANE
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377; 12207695