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The map label for this gene is yulB

Identifier: 16080173

GI number: 16080173

Start: 3201027

End: 3201803

Strand: Reverse

Name: yulB

Synonym: BSU31210

Alternate gene names: 16080173

Gene position: 3201803-3201027 (Counterclockwise)

Preceding gene: 16080174

Following gene: 16080172

Centisome position: 75.95

GC content: 44.53

Gene sequence:

>777_bases
ATGCTAGTAGCAGAACGGCAGCAAAAAATAGTGGAAATAGTAAATATGCGTTCAAGCATCCGCGTTTCCGAATTAAGTGA
CATTTTTTCAGTCACAGAGGAAACCATTCGGCGTGATCTTGAAAAGCTTGAAAAAGAACATAAACTGAGCCGGAGCCACG
GAGGAGCGGTCAGTATTCAGCAGAAGGAATCAGAAATTCATTTTTCTGAACGGGAAATCACGAATGTCATCGAAAAAAAA
GCCATCGCTCACGAAGCGGCCAAATATGTAAAAAGCGGAGACCGAATCATTCTCGATGCAAGCACAACCGCTTGGTACAT
GGCAAAAATACTCCCTGACATTGAGCTCACCGTGATTACAAACTCAATGAAAGCAGCTATTGAACTCAGCAATAAAGAAA
ACATATCAGTCATTTCAACAGGCGGCATTTTGCTGGAAAAATCATTATCATTTGCCGGCCCGTTAGCAGAGCGTTCACTT
GAGACCTATCATGTCAATAAAACCTTTCTGTCATGTAAGGGATTTGACGTACACAACGGGATGAGTGATTCAAATGAGTG
GCAGGCGCTGCTCAAAAAACGGATGATCGAAAGGTCGGACCAGACCATTTTGATGGCCGATTCAAGCAAATGGGGGAACC
GCGAGTTTTCACATATCGCCTCGCTGCAAGATGTCAGCCGCCTTATTACGGATTCTGGACTTGATCCGGCATCGGTAAAA
GCTCTTGAGGACAAAAAGGTGAAGGTGACAGCTGTTCCTCTTTCGAAGAGAGGGTGA

Upstream 100 bases:

>100_bases
TGATCACGGTAGACGGCGGCGTCCCTGCTGCTTTTACGCGTTAGATATATGCTATGATAAAAATATAAGACGGACTACGA
TATGAGGAAGGGCGTTACCG

Downstream 100 bases:

>100_bases
AAGGATGATTTATACTGCCATTGATGTAGGCGCATCAAGCGGGAGAATCATGGTAGGTGAACTGAATGAAGGGAAGCTTG
ACATACAAGAGATTCACAGG

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MLVAERQQKIVEIVNMRSSIRVSELSDIFSVTEETIRRDLEKLEKEHKLSRSHGGAVSIQQKESEIHFSEREITNVIEKK
AIAHEAAKYVKSGDRIILDASTTAWYMAKILPDIELTVITNSMKAAIELSNKENISVISTGGILLEKSLSFAGPLAERSL
ETYHVNKTFLSCKGFDVHNGMSDSNEWQALLKKRMIERSDQTILMADSSKWGNREFSHIASLQDVSRLITDSGLDPASVK
ALEDKKVKVTAVPLSKRG

Sequences:

>Translated_258_residues
MLVAERQQKIVEIVNMRSSIRVSELSDIFSVTEETIRRDLEKLEKEHKLSRSHGGAVSIQQKESEIHFSEREITNVIEKK
AIAHEAAKYVKSGDRIILDASTTAWYMAKILPDIELTVITNSMKAAIELSNKENISVISTGGILLEKSLSFAGPLAERSL
ETYHVNKTFLSCKGFDVHNGMSDSNEWQALLKKRMIERSDQTILMADSSKWGNREFSHIASLQDVSRLITDSGLDPASVK
ALEDKKVKVTAVPLSKRG
>Mature_258_residues
MLVAERQQKIVEIVNMRSSIRVSELSDIFSVTEETIRRDLEKLEKEHKLSRSHGGAVSIQQKESEIHFSEREITNVIEKK
AIAHEAAKYVKSGDRIILDASTTAWYMAKILPDIELTVITNSMKAAIELSNKENISVISTGGILLEKSLSFAGPLAERSL
ETYHVNKTFLSCKGFDVHNGMSDSNEWQALLKKRMIERSDQTILMADSSKWGNREFSHIASLQDVSRLITDSGLDPASVK
ALEDKKVKVTAVPLSKRG

Specific function: Unknown

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI1789059, Length=249, Percent_Identity=36.5461847389558, Blast_Score=150, Evalue=6e-38,
Organism=Escherichia coli, GI1788069, Length=233, Percent_Identity=39.9141630901288, Blast_Score=150, Evalue=8e-38,
Organism=Escherichia coli, GI1789170, Length=230, Percent_Identity=36.0869565217391, Blast_Score=140, Evalue=9e-35,
Organism=Escherichia coli, GI1789519, Length=252, Percent_Identity=31.7460317460317, Blast_Score=138, Evalue=4e-34,
Organism=Escherichia coli, GI226510968, Length=243, Percent_Identity=31.6872427983539, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1787540, Length=251, Percent_Identity=29.4820717131474, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1790753, Length=210, Percent_Identity=29.5238095238095, Blast_Score=104, Evalue=6e-24,
Organism=Escherichia coli, GI87082344, Length=248, Percent_Identity=27.0161290322581, Blast_Score=100, Evalue=9e-23,
Organism=Escherichia coli, GI1789829, Length=246, Percent_Identity=26.0162601626016, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1790635, Length=254, Percent_Identity=25.9842519685039, Blast_Score=84, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YULB_BACSU (O05261)

Other databases:

- EMBL:   Z93938
- EMBL:   AL009126
- PIR:   D70014
- RefSeq:   NP_390999.1
- ProteinModelPortal:   O05261
- SMR:   O05261
- EnsemblBacteria:   EBBACT00000002247
- GeneID:   938838
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU31210
- NMPDR:   fig|224308.1.peg.3124
- GenoList:   BSU31210
- GeneTree:   EBGT00050000001025
- HOGENOM:   HBG694151
- OMA:   ASTTAWY
- PhylomeDB:   O05261
- ProtClustDB:   CLSK238315
- BioCyc:   BSUB:BSU31210-MONOMER
- GO:   GO:0005622
- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PRINTS:   PR00037
- SMART:   SM00420

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR

EC number: NA

Molecular weight: Translated: 28855; Mature: 28855

Theoretical pI: Translated: 7.80; Mature: 7.80

Prosite motif: PS00894 HTH_DEOR_1; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVAERQQKIVEIVNMRSSIRVSELSDIFSVTEETIRRDLEKLEKEHKLSRSHGGAVSIQ
CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
QKESEIHFSEREITNVIEKKAIAHEAAKYVKSGDRIILDASTTAWYMAKILPDIELTVIT
ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHCCCCEEEEEE
NSMKAAIELSNKENISVISTGGILLEKSLSFAGPLAERSLETYHVNKTFLSCKGFDVHNG
CCCEEEEEECCCCCEEEEECCCEEEECCCCCCCCHHHHCHHEEEECCEEEEECCCCCCCC
MSDSNEWQALLKKRMIERSDQTILMADSSKWGNREFSHIASLQDVSRLITDSGLDPASVK
CCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHH
ALEDKKVKVTAVPLSKRG
HHCCCCEEEEEECCCCCC
>Mature Secondary Structure
MLVAERQQKIVEIVNMRSSIRVSELSDIFSVTEETIRRDLEKLEKEHKLSRSHGGAVSIQ
CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
QKESEIHFSEREITNVIEKKAIAHEAAKYVKSGDRIILDASTTAWYMAKILPDIELTVIT
ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHCCCCEEEEEE
NSMKAAIELSNKENISVISTGGILLEKSLSFAGPLAERSLETYHVNKTFLSCKGFDVHNG
CCCEEEEEECCCCCEEEEECCCEEEECCCCCCCCHHHHCHHEEEECCEEEEECCCCCCCC
MSDSNEWQALLKKRMIERSDQTILMADSSKWGNREFSHIASLQDVSRLITDSGLDPASVK
CCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHH
ALEDKKVKVTAVPLSKRG
HHCCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274030; 9384377