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The map label for this gene is yulC

Identifier: 16080172

GI number: 16080172

Start: 3199565

End: 3201022

Strand: Reverse

Name: yulC

Synonym: BSU31200

Alternate gene names: 16080172

Gene position: 3201022-3199565 (Counterclockwise)

Preceding gene: 16080173

Following gene: 16080171

Centisome position: 75.93

GC content: 43.14

Gene sequence:

>1458_bases
ATGATTTATACTGCCATTGATGTAGGCGCATCAAGCGGGAGAATCATGGTAGGTGAACTGAATGAAGGGAAGCTTGACAT
ACAAGAGATTCACAGGTTCGCTAACGGTTTCAGTCAAAGAGACGGGCATTGCTTATGGGATATTGATCATTTGCTAAAAC
AAATCCTGCAAGGACTGCAAAAAGTAAAGACGCTTGGGTATGAACACTGCACCGTAGGCATTGATACATGGGCAGTCGAT
TATGTCTTACTGGACGAAAAAGGCGATCGGTTGCGGGAAGCAATCTCCTACCGTGATAGAAGAACAGATCACACAATAGA
CAAACTGGAACATACCCTCTCAAAAGCCGCAATTTATCAAAAAACAGGAATACAATTTCAGCCTTTCAACACGATCTATC
AATTGTTTGAAGAAGACCGTGAGCTGCTGAAAAAGACAGACAAAATTATGATGATTCCTGATTATTTAGGCTATTGTTTA
ACCGGAAAAGCTGTAACGGAAATCACAAACGTGTCCACAACACAGCTTTTAAACGTCTCAACGGGAAATCTTGATCCTGA
ATTGCTTGAAGCCGTGTCTGTTCTGGAACAGCAATTTGCGCCGCTCACTGAACCGGGGTGTGAACTCGGGAAGCTAAGAA
ATGAGTGGTTCCCGGATTATGATCTCCCGGCGTGCAAGGTGATGACAGTCGCAACACATGATACGGCCTCGGCCGTCATT
GCGGCGCCAGGCGTAAATGATGGCTGGGCGTATATCAGCAGCGGAACATGGTCGTTAATCGGGGTTGAAAACAAAACACC
GATAATAACTGATCTTGCTTTAGAAAACAACTATACAAATGAACGCGGCGCAAACAACACCATTCGCTTTCTCAAAAACA
TTATCGGCATGTGGGTGATACAAGAAGTCAAACAGCAGCTACAAGCAGATTATTCTTTTCAGCAGCTTGCAGAAGAAGCC
AAAAAAACAGAACCATTCCAGCAATTTATAAACTTAAATGATAAACGTTTCCTGAATCCAGAAAACATGATAAAGGAAAT
ACAACATTATTGCAGACAAACCCGCCAAAAGATTCCCCGTACTGCAGGCGAACTTGCCTGCTGCATCTACAGCAATTTAG
CCATCATCTATGCGATAGCCATCAAAGAGCTCGAAACAATCACAGAAAAACCGATCGAGCAATTTCATATCATCGGCGGC
GGAGCCCGGAATGATTTCTTAAATCAATTAACGGCAGACATGAGTGGAAAAGCGGTATATGCAGGGCCGATAGAGGCAAC
TGCCACCGGAAATCTTTTGATGCAAATGATTGCTGCCAAAGAAGTCAAAGACATAAAAGAAGCCCGGCAAGTCGTCAGAA
ATTCCTTTCCGATCAAAGTGTTTACACCTAAAGACATTGATAGAAGCACGATCATTCAGTCATTTCAGCAAACTGTTTTG
AAAGCGCTATCTAAATGA

Upstream 100 bases:

>100_bases
CTTATTACGGATTCTGGACTTGATCCGGCATCGGTAAAAGCTCTTGAGGACAAAAAGGTGAAGGTGACAGCTGTTCCTCT
TTCGAAGAGAGGGTGAAAGG

Downstream 100 bases:

>100_bases
TGAAGAGGTGAAAAGGTTTGAAAAGAAAAGCCAGTATCATGTTTGTCCATCAAGACAAGTACGAAGAATACAAACAGCGG
CATGATGACATTTGGCCTGA

Product: rhamnulokinase

Products: NA

Alternate protein names: Rhamnulose kinase

Number of amino acids: Translated: 485; Mature: 485

Protein sequence:

>485_residues
MIYTAIDVGASSGRIMVGELNEGKLDIQEIHRFANGFSQRDGHCLWDIDHLLKQILQGLQKVKTLGYEHCTVGIDTWAVD
YVLLDEKGDRLREAISYRDRRTDHTIDKLEHTLSKAAIYQKTGIQFQPFNTIYQLFEEDRELLKKTDKIMMIPDYLGYCL
TGKAVTEITNVSTTQLLNVSTGNLDPELLEAVSVLEQQFAPLTEPGCELGKLRNEWFPDYDLPACKVMTVATHDTASAVI
AAPGVNDGWAYISSGTWSLIGVENKTPIITDLALENNYTNERGANNTIRFLKNIIGMWVIQEVKQQLQADYSFQQLAEEA
KKTEPFQQFINLNDKRFLNPENMIKEIQHYCRQTRQKIPRTAGELACCIYSNLAIIYAIAIKELETITEKPIEQFHIIGG
GARNDFLNQLTADMSGKAVYAGPIEATATGNLLMQMIAAKEVKDIKEARQVVRNSFPIKVFTPKDIDRSTIIQSFQQTVL
KALSK

Sequences:

>Translated_485_residues
MIYTAIDVGASSGRIMVGELNEGKLDIQEIHRFANGFSQRDGHCLWDIDHLLKQILQGLQKVKTLGYEHCTVGIDTWAVD
YVLLDEKGDRLREAISYRDRRTDHTIDKLEHTLSKAAIYQKTGIQFQPFNTIYQLFEEDRELLKKTDKIMMIPDYLGYCL
TGKAVTEITNVSTTQLLNVSTGNLDPELLEAVSVLEQQFAPLTEPGCELGKLRNEWFPDYDLPACKVMTVATHDTASAVI
AAPGVNDGWAYISSGTWSLIGVENKTPIITDLALENNYTNERGANNTIRFLKNIIGMWVIQEVKQQLQADYSFQQLAEEA
KKTEPFQQFINLNDKRFLNPENMIKEIQHYCRQTRQKIPRTAGELACCIYSNLAIIYAIAIKELETITEKPIEQFHIIGG
GARNDFLNQLTADMSGKAVYAGPIEATATGNLLMQMIAAKEVKDIKEARQVVRNSFPIKVFTPKDIDRSTIIQSFQQTVL
KALSK
>Mature_485_residues
MIYTAIDVGASSGRIMVGELNEGKLDIQEIHRFANGFSQRDGHCLWDIDHLLKQILQGLQKVKTLGYEHCTVGIDTWAVD
YVLLDEKGDRLREAISYRDRRTDHTIDKLEHTLSKAAIYQKTGIQFQPFNTIYQLFEEDRELLKKTDKIMMIPDYLGYCL
TGKAVTEITNVSTTQLLNVSTGNLDPELLEAVSVLEQQFAPLTEPGCELGKLRNEWFPDYDLPACKVMTVATHDTASAVI
AAPGVNDGWAYISSGTWSLIGVENKTPIITDLALENNYTNERGANNTIRFLKNIIGMWVIQEVKQQLQADYSFQQLAEEA
KKTEPFQQFINLNDKRFLNPENMIKEIQHYCRQTRQKIPRTAGELACCIYSNLAIIYAIAIKELETITEKPIEQFHIIGG
GARNDFLNQLTADMSGKAVYAGPIEATATGNLLMQMIAAKEVKDIKEARQVVRNSFPIKVFTPKDIDRSTIIQSFQQTVL
KALSK

Specific function: Metabolism of L-rhamnose; second step. [C]

COG id: COG1070

COG function: function code G; Sugar (pentulose and hexulose) kinases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rhamnulokinase family

Homologues:

Organism=Escherichia coli, GI1790338, Length=467, Percent_Identity=42.8265524625268, Blast_Score=370, Evalue=1e-103,
Organism=Escherichia coli, GI1789168, Length=431, Percent_Identity=25.754060324826, Blast_Score=114, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RHAB_BACSU (O05262)

Other databases:

- EMBL:   Z93938
- EMBL:   AL009126
- PIR:   E70014
- RefSeq:   NP_390998.1
- ProteinModelPortal:   O05262
- EnsemblBacteria:   EBBACT00000001638
- GeneID:   938839
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU31200
- NMPDR:   fig|224308.1.peg.3123
- GenoList:   BSU31200
- GeneTree:   EBGT00070000032096
- HOGENOM:   HBG313195
- OMA:   EEIHRFK
- PhylomeDB:   O05262
- ProtClustDB:   CLSK447404
- BioCyc:   BSUB:BSU31200-MONOMER
- BRENDA:   2.7.1.5
- HAMAP:   MF_01535
- InterPro:   IPR000577
- InterPro:   IPR018485
- InterPro:   IPR018484
- InterPro:   IPR013449
- PANTHER:   PTHR10196
- TIGRFAMs:   TIGR02627

Pfam domain/function: PF02782 FGGY_C; PF00370 FGGY_N

EC number: =2.7.1.5

Molecular weight: Translated: 54736; Mature: 54736

Theoretical pI: Translated: 5.53; Mature: 5.53

Prosite motif: NA

Important sites: BINDING 11-11 BINDING 256-256 BINDING 293-293 BINDING 301-301

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIYTAIDVGASSGRIMVGELNEGKLDIQEIHRFANGFSQRDGHCLWDIDHLLKQILQGLQ
CEEEEEECCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEECHHHHHHHHHHHHH
KVKTLGYEHCTVGIDTWAVDYVLLDEKGDRLREAISYRDRRTDHTIDKLEHTLSKAAIYQ
HHHHCCCCCEEECCHHHEEEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
KTGIQFQPFNTIYQLFEEDRELLKKTDKIMMIPDYLGYCLTGKAVTEITNVSTTQLLNVS
HCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECHHHHHHHHCCHHHHHHHCCCHHEEEECC
TGNLDPELLEAVSVLEQQFAPLTEPGCELGKLRNEWFPDYDLPACKVMTVATHDTASAVI
CCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCEEE
AAPGVNDGWAYISSGTWSLIGVENKTPIITDLALENNYTNERGANNTIRFLKNIIGMWVI
ECCCCCCCCEEEECCCEEEEEECCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH
QEVKQQLQADYSFQQLAEEAKKTEPFQQFINLNDKRFLNPENMIKEIQHYCRQTRQKIPR
HHHHHHHHHCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
TAGELACCIYSNLAIIYAIAIKELETITEKPIEQFHIIGGGARNDFLNQLTADMSGKAVY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHEEEECCCHHHHHHHHHHHCCCCCEEE
AGPIEATATGNLLMQMIAAKEVKDIKEARQVVRNSFPIKVFTPKDIDRSTIIQSFQQTVL
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHH
KALSK
HHHCC
>Mature Secondary Structure
MIYTAIDVGASSGRIMVGELNEGKLDIQEIHRFANGFSQRDGHCLWDIDHLLKQILQGLQ
CEEEEEECCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEECHHHHHHHHHHHHH
KVKTLGYEHCTVGIDTWAVDYVLLDEKGDRLREAISYRDRRTDHTIDKLEHTLSKAAIYQ
HHHHCCCCCEEECCHHHEEEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
KTGIQFQPFNTIYQLFEEDRELLKKTDKIMMIPDYLGYCLTGKAVTEITNVSTTQLLNVS
HCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECHHHHHHHHCCHHHHHHHCCCHHEEEECC
TGNLDPELLEAVSVLEQQFAPLTEPGCELGKLRNEWFPDYDLPACKVMTVATHDTASAVI
CCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCEEE
AAPGVNDGWAYISSGTWSLIGVENKTPIITDLALENNYTNERGANNTIRFLKNIIGMWVI
ECCCCCCCCEEEECCCEEEEEECCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH
QEVKQQLQADYSFQQLAEEAKKTEPFQQFINLNDKRFLNPENMIKEIQHYCRQTRQKIPR
HHHHHHHHHCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
TAGELACCIYSNLAIIYAIAIKELETITEKPIEQFHIIGGGARNDFLNQLTADMSGKAVY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHEEEECCCHHHHHHHHHHHCCCCCEEE
AGPIEATATGNLLMQMIAAKEVKDIKEARQVVRNSFPIKVFTPKDIDRSTIIQSFQQTVL
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHH
KALSK
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9274030; 9384377