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The map label for this gene is ytmA

Identifier: 16080110

GI number: 16080110

Start: 3131446

End: 3132219

Strand: Reverse

Name: ytmA

Synonym: BSU30580

Alternate gene names: 16080110

Gene position: 3132219-3131446 (Counterclockwise)

Preceding gene: 16080115

Following gene: 16080109

Centisome position: 74.3

GC content: 47.67

Gene sequence:

>774_bases
TTGATTGTAGAGAAAAGAAGATTTCCGTCGCCAAGCCAGCATGTGCGTTTGTATACGATCTGCTATCTGTCAAATGGATT
ACGGGTTAAGGGGCTTCTGGCTGAGCCGGCGGAACCGGGACAATATGACGGATTTTTATATTTGCGCGGCGGGATTAAAA
GCGTGGGCATGGTTCGGCCGGGCCGGATTATCCAGTTTGCATCCCAAGGGTTTGTGGTGTTTGCTCCTTTTTACAGAGGC
AATCAAGGAGGAGAAGGCAATGAGGATTTTGCCGGAGAAGACAGGGAGGATGCATTTTCTGCTTTTCGCCTGCTTCAGCA
GCACCCAAATGTCAAGAAGGATAGAATCCATATCTTCGGTTTTTCCCGCGGCGGAATTATGGGAATGCTCACTGCGATCG
AAATGGGCGGGCAGGCAGCTTCATTTGTTTCCTGGGGAGGCGTCAGTGATATGATTCTTACATACGAGGAGCGGCAGGAT
TTGCGGCGAATGATGAAAAGAGTCATCGGCGGAACACCGAAAAAGGTGCCTGAGGAATATCAATGGAGGACACCGTTTGA
CCAAGTAAACAAAATTCAGGCTCCCGTGCTGTTAATCCATGGAGAAAAAGACCAAAATGTTTCGATTCAGCATTCCTATT
TATTAGAAGAGAAGCTAAAACAACTGCATAAGCCGGTGGAAACATGGTACTACAGTACATTCACACATTATTTCCCGCCA
AAAGAAAACCGGCGTATCGTGCGGCAGCTCACACAATGGATGAAAAACCGCTGA

Upstream 100 bases:

>100_bases
ATATCGTATGATGGGTATAAAAATGTGTGAATGCCTAACCAGGTTCTCCGGATGTAATTTTGGAGTAAGGAAAGCATATA
GAAAAAAGGAGGCGGCTGTT

Downstream 100 bases:

>100_bases
CAGTGAAATATGTTATGATAAAGAAAAAAGAGAACGAAAGGGGATTTCACTTTGGGAATGCCTGTTGAATTTAATACACT
GATTGTGACAAAAGGAAAAG

Product: hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MIVEKRRFPSPSQHVRLYTICYLSNGLRVKGLLAEPAEPGQYDGFLYLRGGIKSVGMVRPGRIIQFASQGFVVFAPFYRG
NQGGEGNEDFAGEDREDAFSAFRLLQQHPNVKKDRIHIFGFSRGGIMGMLTAIEMGGQAASFVSWGGVSDMILTYEERQD
LRRMMKRVIGGTPKKVPEEYQWRTPFDQVNKIQAPVLLIHGEKDQNVSIQHSYLLEEKLKQLHKPVETWYYSTFTHYFPP
KENRRIVRQLTQWMKNR

Sequences:

>Translated_257_residues
MIVEKRRFPSPSQHVRLYTICYLSNGLRVKGLLAEPAEPGQYDGFLYLRGGIKSVGMVRPGRIIQFASQGFVVFAPFYRG
NQGGEGNEDFAGEDREDAFSAFRLLQQHPNVKKDRIHIFGFSRGGIMGMLTAIEMGGQAASFVSWGGVSDMILTYEERQD
LRRMMKRVIGGTPKKVPEEYQWRTPFDQVNKIQAPVLLIHGEKDQNVSIQHSYLLEEKLKQLHKPVETWYYSTFTHYFPP
KENRRIVRQLTQWMKNR
>Mature_257_residues
MIVEKRRFPSPSQHVRLYTICYLSNGLRVKGLLAEPAEPGQYDGFLYLRGGIKSVGMVRPGRIIQFASQGFVVFAPFYRG
NQGGEGNEDFAGEDREDAFSAFRLLQQHPNVKKDRIHIFGFSRGGIMGMLTAIEMGGQAASFVSWGGVSDMILTYEERQD
LRRMMKRVIGGTPKKVPEEYQWRTPFDQVNKIQAPVLLIHGEKDQNVSIQHSYLLEEKLKQLHKPVETWYYSTFTHYFPP
KENRRIVRQLTQWMKNR

Specific function: Unknown

COG id: COG1506

COG function: function code E; Dipeptidyl aminopeptidases/acylaminoacyl-peptidases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S9B family

Homologues:

Organism=Caenorhabditis elegans, GI17552908, Length=165, Percent_Identity=28.4848484848485, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YTMA_BACSU (O34493)

Other databases:

- EMBL:   AF008220
- EMBL:   AL009126
- PIR:   A69996
- RefSeq:   NP_390936.1
- ProteinModelPortal:   O34493
- SMR:   O34493
- EnsemblBacteria:   EBBACT00000001648
- GeneID:   936383
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU30580
- NMPDR:   fig|224308.1.peg.3061
- GenoList:   BSU30580
- GeneTree:   EBGT00070000032203
- HOGENOM:   HBG338253
- OMA:   FTHYFPP
- ProtClustDB:   CLSK2459941
- BioCyc:   BSUB:BSU30580-MONOMER
- GO:   GO:0006508
- InterPro:   IPR002471
- InterPro:   IPR001375

Pfam domain/function: PF00326 Peptidase_S9

EC number: NA

Molecular weight: Translated: 29677; Mature: 29677

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: PS00708 PRO_ENDOPEP_SER

Important sites: ACT_SITE 122-122 ACT_SITE 236-236

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVEKRRFPSPSQHVRLYTICYLSNGLRVKGLLAEPAEPGQYDGFLYLRGGIKSVGMVRP
CCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCC
GRIIQFASQGFVVFAPFYRGNQGGEGNEDFAGEDREDAFSAFRLLQQHPNVKKDRIHIFG
CCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEE
FSRGGIMGMLTAIEMGGQAASFVSWGGVSDMILTYEERQDLRRMMKRVIGGTPKKVPEEY
ECCCCHHHHHHHHHCCCCHHHHEECCCCHHHEEEHHHHHHHHHHHHHHHCCCCCCCCCCC
QWRTPFDQVNKIQAPVLLIHGEKDQNVSIQHSYLLEEKLKQLHKPVETWYYSTFTHYFPP
CCCCCHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
KENRRIVRQLTQWMKNR
CCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIVEKRRFPSPSQHVRLYTICYLSNGLRVKGLLAEPAEPGQYDGFLYLRGGIKSVGMVRP
CCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCC
GRIIQFASQGFVVFAPFYRGNQGGEGNEDFAGEDREDAFSAFRLLQQHPNVKKDRIHIFG
CCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEE
FSRGGIMGMLTAIEMGGQAASFVSWGGVSDMILTYEERQDLRRMMKRVIGGTPKKVPEEY
ECCCCHHHHHHHHHCCCCHHHHEECCCCHHHEEEHHHHHHHHHHHHHHHCCCCCCCCCCC
QWRTPFDQVNKIQAPVLLIHGEKDQNVSIQHSYLLEEKLKQLHKPVETWYYSTFTHYFPP
CCCCCHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
KENRRIVRQLTQWMKNR
CCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377