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The map label for this gene is ytrA

Identifier: 16080098

GI number: 16080098

Start: 3118847

End: 3119239

Strand: Reverse

Name: ytrA

Synonym: BSU30460

Alternate gene names: 16080098

Gene position: 3119239-3118847 (Counterclockwise)

Preceding gene: 16080099

Following gene: 16080097

Centisome position: 73.99

GC content: 42.75

Gene sequence:

>393_bases
ATGATTCAAATCGATCCAAGAAGCTCAACACCCATTTACGAACAAATTATTCAGCAAATGAAAGAGCTTTGTTTGAAAGG
GATCATGAAGCCTGGTGATAAGCTTCCTTCTGTCAGAGAATTGGCAACGATCATTATTGCGAATCCGAACACTGTCAGCA
AAGCGTATAAAGAACTTGAGCGAGAGGGGATTATTGAAACGCTGCGGGGCAGAGGGACCTATATATCGGAGAATGCAAAA
ACGACACTGGTTGAAGGGAAGATGACGATGATTAAAGAGCAACTCAAACAGCTCATCATCGATGCACACTATGCAGGGGT
TGAGCTGGAAAAACTGCACGAATGGATAAAGGAAATCAGCGCTGATGTGAAGGGAGGCAAAAAAAATGATTGA

Upstream 100 bases:

>100_bases
TTTTCTTGTTCTTGTGATGATCGGTTTTGAATGGCAAAAAAGTATAATTGATCATTTTTATCTATAAAAGGTTCAGATCG
TATAGAAAGTAGGGAAGTAA

Downstream 100 bases:

>100_bases
ACTGCGGCAGCTGTCAAAAGCGATTGACGGCAATCAAGTATTAAAAGATGTTTCATTAACAATCGAAAAAGGAGAAATCT
TTGGATTGCTTGGACGCAAT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 130; Mature: 130

Protein sequence:

>130_residues
MIQIDPRSSTPIYEQIIQQMKELCLKGIMKPGDKLPSVRELATIIIANPNTVSKAYKELEREGIIETLRGRGTYISENAK
TTLVEGKMTMIKEQLKQLIIDAHYAGVELEKLHEWIKEISADVKGGKKND

Sequences:

>Translated_130_residues
MIQIDPRSSTPIYEQIIQQMKELCLKGIMKPGDKLPSVRELATIIIANPNTVSKAYKELEREGIIETLRGRGTYISENAK
TTLVEGKMTMIKEQLKQLIIDAHYAGVELEKLHEWIKEISADVKGGKKND
>Mature_130_residues
MIQIDPRSSTPIYEQIIQQMKELCLKGIMKPGDKLPSVRELATIIIANPNTVSKAYKELEREGIIETLRGRGTYISENAK
TTLVEGKMTMIKEQLKQLIIDAHYAGVELEKLHEWIKEISADVKGGKKND

Specific function: Negatively regulates ABC transporter complex ytrBCDEF that plays a role in acetoin utilization during stationary phase and sporulation

COG id: COG1725

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YTRA_BACSU (O34712)

Other databases:

- EMBL:   AF008220
- EMBL:   AL009126
- PIR:   G69999
- RefSeq:   NP_390924.1
- ProteinModelPortal:   O34712
- SMR:   O34712
- EnsemblBacteria:   EBBACT00000002150
- GeneID:   937244
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU30460
- NMPDR:   fig|224308.1.peg.3049
- GenoList:   BSU30460
- GeneTree:   EBGT00050000000783
- HOGENOM:   HBG672500
- OMA:   ATIIIAN
- ProtClustDB:   CLSK887757
- BioCyc:   BSUB:BSU30460-MONOMER
- GO:   GO:0005622
- InterPro:   IPR000524
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- SMART:   SM00345

Pfam domain/function: PF00392 GntR

EC number: NA

Molecular weight: Translated: 14694; Mature: 14694

Theoretical pI: Translated: 8.44; Mature: 8.44

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQIDPRSSTPIYEQIIQQMKELCLKGIMKPGDKLPSVRELATIIIANPNTVSKAYKELE
CEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHH
REGIIETLRGRGTYISENAKTTLVEGKMTMIKEQLKQLIIDAHYAGVELEKLHEWIKEIS
HHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
ADVKGGKKND
HHCCCCCCCC
>Mature Secondary Structure
MIQIDPRSSTPIYEQIIQQMKELCLKGIMKPGDKLPSVRELATIIIANPNTVSKAYKELE
CEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHH
REGIIETLRGRGTYISENAKTTLVEGKMTMIKEQLKQLIIDAHYAGVELEKLHEWIKEIS
HHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
ADVKGGKKND
HHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377