Click here to switch to the map view.

The map label for this gene is yrdQ

Identifier: 16079716

GI number: 16079716

Start: 2721778

End: 2722644

Strand: Direct

Name: yrdQ

Synonym: BSU26630

Alternate gene names: 16079716

Gene position: 2721778-2722644 (Clockwise)

Preceding gene: 16079713

Following gene: 255767615

Centisome position: 64.56

GC content: 38.41

Gene sequence:

>867_bases
ATGGAACTGCGAGACTTACAAATTTTCAAATGCGTAGCCCATCACAAGAGTATTACCGGTGCTGCAAAAGAGTTAAATTA
TGTACAATCTAATGTAACTGCGCGGATTAAGCAATTAGAGAATGAGCTCAAAACACCTCTTTTCAATCGCCATAAAAAAG
GGGTTTCACTAAGCCCAGAGGGCCGAAAAATGATTGAATACGTTAACAAAATTTTGAAAGATGTTGAAGAACTGGAGCAA
GTCTTTCTAGATACTGAAATACCGTCTGGAATATTAAAAATCGGTACAGTGGAAACAGTGAGGATACTGCCGACCATCAT
AGCTTCCTATTATAAAAAGTATCCTAATGTGGATTTATCATTGCAGGCTGGTCTAACAGAGGAACTTATTAAAAAGGTCA
TGAATCACGAATTAGACGGAGCTTTTATTTCAGGCCCCTTGAAACATTCTATTCTGGAACAGTATGATGTTTATACTGAA
AAACTTACTCTTGTAACCAGTAACAAAACGTTTAATATAGAGGATTTTTCAACGACTCCGATTCTTGTTTTTAACCAGGG
GTGCGGGTATCGGTCTAGGCTTGAACAATGGCTCAAAGATGAAGGTGTGCTCCCAAACAGAATGATGGAATTTAACATCC
TAGAGACAATCTTAAATAGTGTTGCACTTGGACTCGGTATAACAGTGGTACCGGAATCTGCTGTTATGCATCTAGCTGTA
CAAGGTAAGGTTTATTGCCACCCATTGCCTGAGAAAGACAGCTGTATCTCAACAATTTTTATACGCCATAAAGATGCGTA
CCTGACAAATTCAATGCGCAGCCTCCTAAAGACCATTGTTGAACATAAAAATATGAGTATGGCTTAA

Upstream 100 bases:

>100_bases
TTACAATGAGAATTATAAAAAGAAGTAAGCATCAAGTAAAATGAACAAAAGTGATGAAAAACATCATTGATAATGATACT
TTAATGAAGGGGGGATCTTC

Downstream 100 bases:

>100_bases
AGTGATTTTTCTCTTTCTATATTCTAACTTCTTAAATAAAAGAGAAGGCTCATCTCCACTTCGCTACCCTTATTCACGCA
AAAAATAGAGCAGTAAACAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 288

Protein sequence:

>288_residues
MELRDLQIFKCVAHHKSITGAAKELNYVQSNVTARIKQLENELKTPLFNRHKKGVSLSPEGRKMIEYVNKILKDVEELEQ
VFLDTEIPSGILKIGTVETVRILPTIIASYYKKYPNVDLSLQAGLTEELIKKVMNHELDGAFISGPLKHSILEQYDVYTE
KLTLVTSNKTFNIEDFSTTPILVFNQGCGYRSRLEQWLKDEGVLPNRMMEFNILETILNSVALGLGITVVPESAVMHLAV
QGKVYCHPLPEKDSCISTIFIRHKDAYLTNSMRSLLKTIVEHKNMSMA

Sequences:

>Translated_288_residues
MELRDLQIFKCVAHHKSITGAAKELNYVQSNVTARIKQLENELKTPLFNRHKKGVSLSPEGRKMIEYVNKILKDVEELEQ
VFLDTEIPSGILKIGTVETVRILPTIIASYYKKYPNVDLSLQAGLTEELIKKVMNHELDGAFISGPLKHSILEQYDVYTE
KLTLVTSNKTFNIEDFSTTPILVFNQGCGYRSRLEQWLKDEGVLPNRMMEFNILETILNSVALGLGITVVPESAVMHLAV
QGKVYCHPLPEKDSCISTIFIRHKDAYLTNSMRSLLKTIVEHKNMSMA
>Mature_288_residues
MELRDLQIFKCVAHHKSITGAAKELNYVQSNVTARIKQLENELKTPLFNRHKKGVSLSPEGRKMIEYVNKILKDVEELEQ
VFLDTEIPSGILKIGTVETVRILPTIIASYYKKYPNVDLSLQAGLTEELIKKVMNHELDGAFISGPLKHSILEQYDVYTE
KLTLVTSNKTFNIEDFSTTPILVFNQGCGYRSRLEQWLKDEGVLPNRMMEFNILETILNSVALGLGITVVPESAVMHLAV
QGKVYCHPLPEKDSCISTIFIRHKDAYLTNSMRSLLKTIVEHKNMSMA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI1787806, Length=272, Percent_Identity=31.9852941176471, Blast_Score=153, Evalue=1e-38,
Organism=Escherichia coli, GI1788481, Length=285, Percent_Identity=26.6666666666667, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI157672245, Length=284, Percent_Identity=22.887323943662, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI87082132, Length=289, Percent_Identity=22.8373702422145, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1790399, Length=245, Percent_Identity=24.4897959183673, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790208, Length=247, Percent_Identity=27.5303643724696, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI1788748, Length=312, Percent_Identity=20.8333333333333, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787530, Length=248, Percent_Identity=25, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1788887, Length=298, Percent_Identity=24.1610738255034, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1788296, Length=251, Percent_Identity=27.4900398406374, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI145693105, Length=289, Percent_Identity=23.8754325259516, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1790262, Length=254, Percent_Identity=22.8346456692913, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786401, Length=166, Percent_Identity=28.9156626506024, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1789639, Length=126, Percent_Identity=28.5714285714286, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI2367136, Length=302, Percent_Identity=23.841059602649, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1787601, Length=155, Percent_Identity=25.1612903225806, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1788297, Length=253, Percent_Identity=23.3201581027668, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): CZCR_BACSU (P71025)

Other databases:

- EMBL:   U62055
- EMBL:   U93876
- EMBL:   AL009126
- PIR:   F69973
- RefSeq:   NP_390540.1
- ProteinModelPortal:   P71025
- SMR:   P71025
- EnsemblBacteria:   EBBACT00000003756
- GeneID:   937628
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU26630
- NMPDR:   fig|224308.1.peg.2665
- GenoList:   BSU26630
- GeneTree:   EBGT00070000031761
- HOGENOM:   HBG685425
- OMA:   LIKSEFC
- PhylomeDB:   P71025
- ProtClustDB:   CLSK887634
- BioCyc:   BSUB:BSU26630-MONOMER
- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PRINTS:   PR00039

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate

EC number: NA

Molecular weight: Translated: 32668; Mature: 32668

Theoretical pI: Translated: 7.63; Mature: 7.63

Prosite motif: PS50931 HTH_LYSR; PS00290 IG_MHC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELRDLQIFKCVAHHKSITGAAKELNYVQSNVTARIKQLENELKTPLFNRHKKGVSLSPE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCC
GRKMIEYVNKILKDVEELEQVFLDTEIPSGILKIGTVETVRILPTIIASYYKKYPNVDLS
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHHHHHHHHHCCCCCEE
LQAGLTEELIKKVMNHELDGAFISGPLKHSILEQYDVYTEKLTLVTSNKTFNIEDFSTTP
ECCCCHHHHHHHHHCCCCCCHHCCCHHHHHHHHHHHHHHHEEEEEECCCEEECCCCCCCC
ILVFNQGCGYRSRLEQWLKDEGVLPNRMMEFNILETILNSVALGLGITVVPESAVMHLAV
EEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCEEECCCHHHEEEEE
QGKVYCHPLPEKDSCISTIFIRHKDAYLTNSMRSLLKTIVEHKNMSMA
CCEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MELRDLQIFKCVAHHKSITGAAKELNYVQSNVTARIKQLENELKTPLFNRHKKGVSLSPE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCC
GRKMIEYVNKILKDVEELEQVFLDTEIPSGILKIGTVETVRILPTIIASYYKKYPNVDLS
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHHHHHHHHHCCCCCEE
LQAGLTEELIKKVMNHELDGAFISGPLKHSILEQYDVYTEKLTLVTSNKTFNIEDFSTTP
ECCCCHHHHHHHHHCCCCCCHHCCCHHHHHHHHHHHHHHHEEEEEECCCEEECCCCCCCC
ILVFNQGCGYRSRLEQWLKDEGVLPNRMMEFNILETILNSVALGLGITVVPESAVMHLAV
EEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCEEECCCHHHEEEEE
QGKVYCHPLPEKDSCISTIFIRHKDAYLTNSMRSLLKTIVEHKNMSMA
CCEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9099864; 9308178; 9384377