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The map label for this gene is yrkC

Identifier: 16079709

GI number: 16079709

Start: 2714933

End: 2715493

Strand: Reverse

Name: yrkC

Synonym: BSU26560

Alternate gene names: 16079709

Gene position: 2715493-2714933 (Counterclockwise)

Preceding gene: 16079710

Following gene: 16079708

Centisome position: 64.42

GC content: 39.39

Gene sequence:

>561_bases
ATGTACTATAACCCTTTTTCGCCTCAATGTTATTATTATGTGACTGTGCCGATGTATAATGATGGAAGATCTGTTTATTG
GACTATTCCAAATGAGATGGAGAAAGTACACAGAGGTGCCGATTTGCGCTCTTCATATGAAGATAGAAACCTTCTTTTGA
AGGATTATGGACCAAAACCATTTGTTGTAAATATCAATAGAGCCACAAAACAAAACAATACGTTCCGTACTGCTTTATGG
ACAGGAAAGCATTTTCAAGTTACTTTGATGAGTCTTGGTATTGGAGAAGACATTGGTTTGGAAATCCATCCTAACGTTGA
CCAGTTCTTACGGATTGAGCAGGGGCGTGGGATCGTCAAAATGGGAAAGAGCAAAGATCATTTGAACTTTCAAAGAAATG
TCTATGATGATTCTGCCATTGTTGTCCCTGCCGGCACTTGGCACAACGTAATTAATACAGGAAATACGCCATTAAAACTT
TACTCCATTTATGCTCCTCCTAACCATCCATTTGGTACAGTTCATGAAACCAAAGCAGATGCAGTGGCTGCGGAAGATTA
G

Upstream 100 bases:

>100_bases
TTCATTTTTGTGTTTAATATGAGTTTTCTTGATTTAGCACACTCCCTTAATAAATGCATAGGATACTATCACAAAAATTT
ATAATTGCGGGGATCAAAAA

Downstream 100 bases:

>100_bases
CACAGATATTCTGGAGAATTCTAGAATAATTAAAGTCACATCCAGCATGAAACATGGGGAACCAGTACCATGCTAATGAA
ACCCCATTTAATATCCAAGC

Product: dioxygenase; cupin family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MYYNPFSPQCYYYVTVPMYNDGRSVYWTIPNEMEKVHRGADLRSSYEDRNLLLKDYGPKPFVVNINRATKQNNTFRTALW
TGKHFQVTLMSLGIGEDIGLEIHPNVDQFLRIEQGRGIVKMGKSKDHLNFQRNVYDDSAIVVPAGTWHNVINTGNTPLKL
YSIYAPPNHPFGTVHETKADAVAAED

Sequences:

>Translated_186_residues
MYYNPFSPQCYYYVTVPMYNDGRSVYWTIPNEMEKVHRGADLRSSYEDRNLLLKDYGPKPFVVNINRATKQNNTFRTALW
TGKHFQVTLMSLGIGEDIGLEIHPNVDQFLRIEQGRGIVKMGKSKDHLNFQRNVYDDSAIVVPAGTWHNVINTGNTPLKL
YSIYAPPNHPFGTVHETKADAVAAED
>Mature_186_residues
MYYNPFSPQCYYYVTVPMYNDGRSVYWTIPNEMEKVHRGADLRSSYEDRNLLLKDYGPKPFVVNINRATKQNNTFRTALW
TGKHFQVTLMSLGIGEDIGLEIHPNVDQFLRIEQGRGIVKMGKSKDHLNFQRNVYDDSAIVVPAGTWHNVINTGNTPLKL
YSIYAPPNHPFGTVHETKADAVAAED

Specific function: Unknown

COG id: COG0662

COG function: function code G; Mannose-6-phosphate isomerase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YRKC_BACSU (P54430)

Other databases:

- EMBL:   D84432
- EMBL:   AL009126
- PIR:   A69976
- RefSeq:   NP_390533.1
- ProteinModelPortal:   P54430
- SMR:   P54430
- EnsemblBacteria:   EBBACT00000004036
- GeneID:   937645
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU26560
- NMPDR:   fig|224308.1.peg.2658
- GenoList:   BSU26560
- GeneTree:   EBGT00050000002960
- HOGENOM:   HBG332374
- OMA:   KQNNTFR
- ProtClustDB:   CLSK2752456
- BioCyc:   BSUB:BSU26560-MONOMER
- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR014710
- Gene3D:   G3DSA:2.60.120.10

Pfam domain/function: PF07883 Cupin_2; SSF51182 RmlC_like_cupin

EC number: NA

Molecular weight: Translated: 21255; Mature: 21255

Theoretical pI: Translated: 7.78; Mature: 7.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYYNPFSPQCYYYVTVPMYNDGRSVYWTIPNEMEKVHRGADLRSSYEDRNLLLKDYGPKP
CCCCCCCCCEEEEEEEEEECCCCEEEEECCHHHHHHHCCCCCCCCCCCCCEEEECCCCCC
FVVNINRATKQNNTFRTALWTGKHFQVTLMSLGIGEDIGLEIHPNVDQFLRIEQGRGIVK
EEEECCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCCCEEECCCHHHEEEECCCCCEEE
MGKSKDHLNFQRNVYDDSAIVVPAGTWHNVINTGNTPLKLYSIYAPPNHPFGTVHETKAD
ECCCCCCCCEECCCCCCCEEEEECCCCHHHHCCCCCCEEEEEEECCCCCCCCCEECCCCC
AVAAED
EEECCC
>Mature Secondary Structure
MYYNPFSPQCYYYVTVPMYNDGRSVYWTIPNEMEKVHRGADLRSSYEDRNLLLKDYGPKP
CCCCCCCCCEEEEEEEEEECCCCEEEEECCHHHHHHHCCCCCCCCCCCCCEEEECCCCCC
FVVNINRATKQNNTFRTALWTGKHFQVTLMSLGIGEDIGLEIHPNVDQFLRIEQGRGIVK
EEEECCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCCCEEECCCHHHEEEECCCCCEEE
MGKSKDHLNFQRNVYDDSAIVVPAGTWHNVINTGNTPLKLYSIYAPPNHPFGTVHETKAD
ECCCCCCCCEECCCCCCCEEEEECCCCHHHHCCCCCCEEEEEEECCCCCCCCCEECCCCC
AVAAED
EEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377