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The map label for this gene is dapB

Identifier: 16079306

GI number: 16079306

Start: 2359340

End: 2360143

Strand: Reverse

Name: dapB

Synonym: BSU22490

Alternate gene names: 16079306

Gene position: 2360143-2359340 (Counterclockwise)

Preceding gene: 16079307

Following gene: 16079305

Centisome position: 55.99

GC content: 43.78

Gene sequence:

>804_bases
ATGTCAAACGAAACAATTAAATTAGTCATTGCGGGACCGCGTGGAAGAATGGGGCAGGAAGCTGTTAAATTGGCAGAACG
AACACCACATTTTGACCTTGTAGGGGCCATAGACCATACATACGATCAGCAAAAATTATCTGATGTGATGCCTGTTGAGT
CAGATGCTTTCATTTACACAGATATCCATGCCTGTTTTACAGAAACACAACCGGATGTCTTGATTGATTTAACAACGCCC
GAAATCGGAAAAGTACATACAAAAATTGCATTAGAGCACGGAGTCCGTCCAGTTGTCGGAACAACCGGTTTCTCAGAAGC
TGATTTAAAAGAGCTCACATCTTTAACAGAAGAAAAAGGGATCGGAGCCATCATCGCGCCAAATTTTGCGCTCGGTGCGA
TACTGATGATGAAATTTTCAAAAATGGCTGCCAACTATTTTGAGGATGTTGAGATTATTGAGCTTCATCATGACCAGAAG
CTTGACGCACCAAGCGGAACTGCGCTTAAAACAGCGGAAATGATTTCAGAAGTCCGTAAAGAAAAGCAGCAAGGACATCC
GGATGAAAAAGAAATTCTCCCAGGAGCAAGAGGAGCGGAGCAAAACGGTATTCGCTTGCACAGCGTCCGTCTTCCGGGAC
TGATCGCGCATCAGGAGGTCATGTTCGGCATGGATGGCCAAACGCTTCAGATACGCCATGATTCTTATAACCGTGCTTCT
TTCATGTCAGGCGTTAAACTGTCAGTCGAACAAGTCATGAAGATTGATCAGCTTGTGTATGGTTTAGAAAATATCATTGA
TTAG

Upstream 100 bases:

>100_bases
TCTCTTTAGAGGAAGCTCACGACCGAGTCATGCATAAATTTAATACAAGAGATAAAGATCGCTGGACCAGAAAAGAAGAA
GGAAAGTAGAGGAGATCAAG

Downstream 100 bases:

>100_bases
ACGGGGGGATAAACAATGAAAATTGCTTTGATCGCGCATGACAAGAAAAAACAGGATATGGTTCAATTTACGACTGCCTA
TCGGGATATTTTAAAGAATC

Product: dihydrodipicolinate reductase

Products: NA

Alternate protein names: DHPR [H]

Number of amino acids: Translated: 267; Mature: 266

Protein sequence:

>267_residues
MSNETIKLVIAGPRGRMGQEAVKLAERTPHFDLVGAIDHTYDQQKLSDVMPVESDAFIYTDIHACFTETQPDVLIDLTTP
EIGKVHTKIALEHGVRPVVGTTGFSEADLKELTSLTEEKGIGAIIAPNFALGAILMMKFSKMAANYFEDVEIIELHHDQK
LDAPSGTALKTAEMISEVRKEKQQGHPDEKEILPGARGAEQNGIRLHSVRLPGLIAHQEVMFGMDGQTLQIRHDSYNRAS
FMSGVKLSVEQVMKIDQLVYGLENIID

Sequences:

>Translated_267_residues
MSNETIKLVIAGPRGRMGQEAVKLAERTPHFDLVGAIDHTYDQQKLSDVMPVESDAFIYTDIHACFTETQPDVLIDLTTP
EIGKVHTKIALEHGVRPVVGTTGFSEADLKELTSLTEEKGIGAIIAPNFALGAILMMKFSKMAANYFEDVEIIELHHDQK
LDAPSGTALKTAEMISEVRKEKQQGHPDEKEILPGARGAEQNGIRLHSVRLPGLIAHQEVMFGMDGQTLQIRHDSYNRAS
FMSGVKLSVEQVMKIDQLVYGLENIID
>Mature_266_residues
SNETIKLVIAGPRGRMGQEAVKLAERTPHFDLVGAIDHTYDQQKLSDVMPVESDAFIYTDIHACFTETQPDVLIDLTTPE
IGKVHTKIALEHGVRPVVGTTGFSEADLKELTSLTEEKGIGAIIAPNFALGAILMMKFSKMAANYFEDVEIIELHHDQKL
DAPSGTALKTAEMISEVRKEKQQGHPDEKEILPGARGAEQNGIRLHSVRLPGLIAHQEVMFGMDGQTLQIRHDSYNRASF
MSGVKLSVEQVMKIDQLVYGLENIID

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; second step. [C]

COG id: COG0289

COG function: function code E; Dihydrodipicolinate reductase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dihydrodipicolinate reductase family [H]

Homologues:

Organism=Escherichia coli, GI1786214, Length=280, Percent_Identity=27.5, Blast_Score=102, Evalue=3e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022663
- InterPro:   IPR000846
- InterPro:   IPR022664
- InterPro:   IPR011770
- InterPro:   IPR016040 [H]

Pfam domain/function: PF05173 DapB_C; PF01113 DapB_N [H]

EC number: =1.3.1.26 [H]

Molecular weight: Translated: 29488; Mature: 29357

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: PS01298 DAPB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNETIKLVIAGPRGRMGQEAVKLAERTPHFDLVGAIDHTYDQQKLSDVMPVESDAFIYT
CCCCEEEEEEECCCCCCHHHHHHHHHCCCCEEEEECHHHHCCHHHHHHCCCCCCCCEEEE
DIHACFTETQPDVLIDLTTPEIGKVHTKIALEHGVRPVVGTTGFSEADLKELTSLTEEKG
EHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHCC
IGAIIAPNFALGAILMMKFSKMAANYFEDVEIIELHHDQKLDAPSGTALKTAEMISEVRK
CCEEECCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHH
EKQQGHPDEKEILPGARGAEQNGIRLHSVRLPGLIAHQEVMFGMDGQTLQIRHDSYNRAS
HHHHCCCCHHHHCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCEEEEECCCCCHHH
FMSGVKLSVEQVMKIDQLVYGLENIID
HHCCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SNETIKLVIAGPRGRMGQEAVKLAERTPHFDLVGAIDHTYDQQKLSDVMPVESDAFIYT
CCCEEEEEEECCCCCCHHHHHHHHHCCCCEEEEECHHHHCCHHHHHHCCCCCCCCEEEE
DIHACFTETQPDVLIDLTTPEIGKVHTKIALEHGVRPVVGTTGFSEADLKELTSLTEEKG
EHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHCC
IGAIIAPNFALGAILMMKFSKMAANYFEDVEIIELHHDQKLDAPSGTALKTAEMISEVRK
CCEEECCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHH
EKQQGHPDEKEILPGARGAEQNGIRLHSVRLPGLIAHQEVMFGMDGQTLQIRHDSYNRAS
HHHHCCCCHHHHCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCEEEEECCCCCHHH
FMSGVKLSVEQVMKIDQLVYGLENIID
HHCCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA