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The map label for this gene is ypjD

Identifier: 16079307

GI number: 16079307

Start: 2360155

End: 2360490

Strand: Reverse

Name: ypjD

Synonym: BSU22500

Alternate gene names: 16079307

Gene position: 2360490-2360155 (Counterclockwise)

Preceding gene: 16079309

Following gene: 16079306

Centisome position: 55.99

GC content: 41.37

Gene sequence:

>336_bases
GTGAGTGATAAAACAATGAAAGACATACAGGCTGAAGTAGACCGTTACATAGGCCAATTTAAAGAAGGATATTTTAGCCC
GCTGGCCATGATGGCGAGGCTGACTGAAGAACTGGGCGAGCTTGCCAGAGAAGTGAATCACCGTTATGGAGAAAAACCAA
AAAAAGCGACTGAAGATGATAAAAGCATGGAAGAGGAAATAGGCGATGTGCTATTTGTATTGGTTTGTTTAGCCAACTCT
CTTGATATCTCTTTAGAGGAAGCTCACGACCGAGTCATGCATAAATTTAATACAAGAGATAAAGATCGCTGGACCAGAAA
AGAAGAAGGAAAGTAG

Upstream 100 bases:

>100_bases
ATTATAGTGGATGAAAAAGAAAACAGCAAACGTGCTTAAACATTTGTCAAACGTATCTGAATTAGCTAACATGTAAGAGG
ATGATAGGAGGTTTCGTTCA

Downstream 100 bases:

>100_bases
AGGAGATCAAGATGTCAAACGAAACAATTAAATTAGTCATTGCGGGACCGCGTGGAAGAATGGGGCAGGAAGCTGTTAAA
TTGGCAGAACGAACACCACA

Product: nucleotide phosphohydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 111; Mature: 110

Protein sequence:

>111_residues
MSDKTMKDIQAEVDRYIGQFKEGYFSPLAMMARLTEELGELAREVNHRYGEKPKKATEDDKSMEEEIGDVLFVLVCLANS
LDISLEEAHDRVMHKFNTRDKDRWTRKEEGK

Sequences:

>Translated_111_residues
MSDKTMKDIQAEVDRYIGQFKEGYFSPLAMMARLTEELGELAREVNHRYGEKPKKATEDDKSMEEEIGDVLFVLVCLANS
LDISLEEAHDRVMHKFNTRDKDRWTRKEEGK
>Mature_110_residues
SDKTMKDIQAEVDRYIGQFKEGYFSPLAMMARLTEELGELAREVNHRYGEKPKKATEDDKSMEEEIGDVLFVLVCLANSL
DISLEEAHDRVMHKFNTRDKDRWTRKEEGK

Specific function: Unknown

COG id: COG1694

COG function: function code R; Predicted pyrophosphatase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YPJD_BACSU (P42979)

Other databases:

- EMBL:   L38424
- EMBL:   L47709
- EMBL:   AL009126
- PIR:   D69937
- RefSeq:   NP_390131.1
- PDB:   2GTA
- PDBsum:   2GTA
- ProteinModelPortal:   P42979
- SMR:   P42979
- EnsemblBacteria:   EBBACT00000002301
- GeneID:   939022
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU22500
- NMPDR:   fig|224308.1.peg.2254
- GenoList:   BSU22500
- GeneTree:   EBGT00050000002573
- HOGENOM:   HBG342270
- OMA:   RYFNELT
- ProtClustDB:   CLSK887496
- BioCyc:   BSUB:BSU22500-MONOMER
- InterPro:   IPR012359
- InterPro:   IPR004518
- PIRSF:   PIRSF029904

Pfam domain/function: PF03819 MazG

EC number: NA

Molecular weight: Translated: 12971; Mature: 12840

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDKTMKDIQAEVDRYIGQFKEGYFSPLAMMARLTEELGELAREVNHRYGEKPKKATEDD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
KSMEEEIGDVLFVLVCLANSLDISLEEAHDRVMHKFNTRDKDRWTRKEEGK
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCC
>Mature Secondary Structure 
SDKTMKDIQAEVDRYIGQFKEGYFSPLAMMARLTEELGELAREVNHRYGEKPKKATEDD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
KSMEEEIGDVLFVLVCLANSLDISLEEAHDRVMHKFNTRDKDRWTRKEEGK
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377