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The map label for this gene is yodT

Identifier: 16079032

GI number: 16079032

Start: 2144356

End: 2145690

Strand: Reverse

Name: yodT

Synonym: BSU19740

Alternate gene names: 16079032

Gene position: 2145690-2144356 (Counterclockwise)

Preceding gene: 255767463

Following gene: 16079031

Centisome position: 50.9

GC content: 46.07

Gene sequence:

>1335_bases
ATGAGCAGTTATTTGATTAAGCCAGAGCTTAGCTCGGCCTATCCGGTTGTCAGTTATGCGAAGGGTTCATATGTTTATGA
TCAGACCGGAAAAAAATATCTCGACGGCTCGTCAGGTGCGGTGACATGTAATATCGGCCACGGAGTTCGTGATGTGACTG
AGAAGCTGAAAGAACAGCTTGATCAGGTGTCTTTTGCTTACCGCTCACAGTTTACGAGTGAGCCCGCCGAGCAATTAGCC
GCTCTCTTGGCACAGGAGCTGCCCGGAGATGTGAATTGGTCTTTTTTTGTCAACAGCGGATCAGAAGCGATAGAAACAGC
TATGAAAATCGCCATTCAGTATTGGCAGGAAAAAAAGCAAACACAAAAATCCATCTTTTTGTCTCGATGGAGCAGTTACC
ACGGAATAACTTTGGGAGCGCTTTCATTGTCTGGTTTTTATGAAAGGAGATACCGGTTCACCCATCTCATTGAGCGGTAT
CCAGCTATCTCAGCTCCACATATTTATCGGCTGAATCACGAGACGGAAGAAGACTTTGTTCAGACTGCAGCTGATGAACT
GGACACCATGATTAAAAGAATCGGAAGCCAATTCATCGCCGGCTTTGTGGCTGAGCCTATTATTGGTGCTGCAGGAGCAG
CGATTACTCCGCCTCCGGGATATTATGAGAGATTAAGTGAGGTATGCCGCACACACGATGTGCTTTTTATTGCAGATGAA
GTGATGACGGGGCTTGGGAGAACAGGAAGGATGCTCGCGACAGAGCATTGGGATACCGTACCTGATATTGCTGTACTGGG
GAAGGGACTCGGTGCGGGGTATGCACCTATTGCTGCTGCCGTCGTATCTGATTCTATTATTGAAACCATAAAACAAGGGT
CAGGTGTGATTATGAGCGGTCACACATATAGTGCACATCCCTATTCAGCCAAAGCTGCTCTTGAAGTTTTGCGATATGTG
TTAAAGCACGGCTTGATCAAACAATCAGAAAAAAAGGGCGCTGTGCTGAAGAAGAAGCTTGATGAGGCGGCATCTCAAAG
CGGCATTATAGGTGAGGTGCGCGGAAAAGGACTGCTATTAGGCATTGAATTTGTGGCAGACCAAAAAACGAAGAAAGTGT
TTCCGCCAGAGCAGGCGATAACCCAGCTTATTGTCAGCGAGGCGAAAAAACGCGGGCTGATTGTTTATCCTTCCAAAGCT
GGAATAGACAGTGGAGAAGGAGATGCTGTCATTATTGCTCCTCCTTTTACTATTTCAGACGGTGAAATGGAAGAGCTTAT
CTCTATTTTTTCAGAAACAGTTGCAGCGGTCGAAAAAAACTTAAAAAAGGATTGA

Upstream 100 bases:

>100_bases
TTAGGAAGGCTCTTTTTATGTGAAAAAGTTTTTGCGGGGAACGTCATGCCGCCATTTGGACACTCATACAATATGGTAAA
AGGGGTTTTGAGGTGGGAGC

Downstream 100 bases:

>100_bases
CATTAAATGGCGCCATTTCAAAAAGCAATCAGCATTGACACAGCAATTGCAGATGTTCGGGATGGATCGGTTCTGATGTT
TGGCGGTTTTGGGGGAGTCG

Product: hypothetical protein

Products: L-Glutamate; L-Glutamate 5-semialdehyde [C]

Alternate protein names: NA

Number of amino acids: Translated: 444; Mature: 443

Protein sequence:

>444_residues
MSSYLIKPELSSAYPVVSYAKGSYVYDQTGKKYLDGSSGAVTCNIGHGVRDVTEKLKEQLDQVSFAYRSQFTSEPAEQLA
ALLAQELPGDVNWSFFVNSGSEAIETAMKIAIQYWQEKKQTQKSIFLSRWSSYHGITLGALSLSGFYERRYRFTHLIERY
PAISAPHIYRLNHETEEDFVQTAADELDTMIKRIGSQFIAGFVAEPIIGAAGAAITPPPGYYERLSEVCRTHDVLFIADE
VMTGLGRTGRMLATEHWDTVPDIAVLGKGLGAGYAPIAAAVVSDSIIETIKQGSGVIMSGHTYSAHPYSAKAALEVLRYV
LKHGLIKQSEKKGAVLKKKLDEAASQSGIIGEVRGKGLLLGIEFVADQKTKKVFPPEQAITQLIVSEAKKRGLIVYPSKA
GIDSGEGDAVIIAPPFTISDGEMEELISIFSETVAAVEKNLKKD

Sequences:

>Translated_444_residues
MSSYLIKPELSSAYPVVSYAKGSYVYDQTGKKYLDGSSGAVTCNIGHGVRDVTEKLKEQLDQVSFAYRSQFTSEPAEQLA
ALLAQELPGDVNWSFFVNSGSEAIETAMKIAIQYWQEKKQTQKSIFLSRWSSYHGITLGALSLSGFYERRYRFTHLIERY
PAISAPHIYRLNHETEEDFVQTAADELDTMIKRIGSQFIAGFVAEPIIGAAGAAITPPPGYYERLSEVCRTHDVLFIADE
VMTGLGRTGRMLATEHWDTVPDIAVLGKGLGAGYAPIAAAVVSDSIIETIKQGSGVIMSGHTYSAHPYSAKAALEVLRYV
LKHGLIKQSEKKGAVLKKKLDEAASQSGIIGEVRGKGLLLGIEFVADQKTKKVFPPEQAITQLIVSEAKKRGLIVYPSKA
GIDSGEGDAVIIAPPFTISDGEMEELISIFSETVAAVEKNLKKD
>Mature_443_residues
SSYLIKPELSSAYPVVSYAKGSYVYDQTGKKYLDGSSGAVTCNIGHGVRDVTEKLKEQLDQVSFAYRSQFTSEPAEQLAA
LLAQELPGDVNWSFFVNSGSEAIETAMKIAIQYWQEKKQTQKSIFLSRWSSYHGITLGALSLSGFYERRYRFTHLIERYP
AISAPHIYRLNHETEEDFVQTAADELDTMIKRIGSQFIAGFVAEPIIGAAGAAITPPPGYYERLSEVCRTHDVLFIADEV
MTGLGRTGRMLATEHWDTVPDIAVLGKGLGAGYAPIAAAVVSDSIIETIKQGSGVIMSGHTYSAHPYSAKAALEVLRYVL
KHGLIKQSEKKGAVLKKKLDEAASQSGIIGEVRGKGLLLGIEFVADQKTKKVFPPEQAITQLIVSEAKKRGLIVYPSKAG
IDSGEGDAVIIAPPFTISDGEMEELISIFSETVAAVEKNLKKD

Specific function: Unknown

COG id: COG0161

COG function: function code H; Adenosylmethionine-8-amino-7-oxononanoate aminotransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family

Homologues:

Organism=Homo sapiens, GI4557809, Length=423, Percent_Identity=30.4964539007092, Blast_Score=164, Evalue=2e-40,
Organism=Homo sapiens, GI284507298, Length=342, Percent_Identity=31.2865497076023, Blast_Score=142, Evalue=9e-34,
Organism=Homo sapiens, GI226442705, Length=433, Percent_Identity=26.7898383371824, Blast_Score=141, Evalue=1e-33,
Organism=Homo sapiens, GI13994255, Length=431, Percent_Identity=27.3781902552204, Blast_Score=140, Evalue=2e-33,
Organism=Homo sapiens, GI37574042, Length=433, Percent_Identity=26.0969976905312, Blast_Score=138, Evalue=1e-32,
Organism=Homo sapiens, GI226442709, Length=408, Percent_Identity=25.9803921568627, Blast_Score=125, Evalue=1e-28,
Organism=Homo sapiens, GI24119277, Length=436, Percent_Identity=26.1467889908257, Blast_Score=122, Evalue=6e-28,
Organism=Homo sapiens, GI188536080, Length=461, Percent_Identity=21.9088937093275, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI38679950, Length=461, Percent_Identity=21.9088937093275, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI38679946, Length=461, Percent_Identity=21.9088937093275, Blast_Score=85, Evalue=1e-16,
Organism=Escherichia coli, GI145693181, Length=431, Percent_Identity=29.9303944315545, Blast_Score=172, Evalue=3e-44,
Organism=Escherichia coli, GI1789016, Length=427, Percent_Identity=29.2740046838407, Blast_Score=160, Evalue=2e-40,
Organism=Escherichia coli, GI1786991, Length=425, Percent_Identity=28.7058823529412, Blast_Score=142, Evalue=4e-35,
Organism=Escherichia coli, GI1788044, Length=421, Percent_Identity=27.5534441805226, Blast_Score=141, Evalue=9e-35,
Organism=Escherichia coli, GI1789759, Length=436, Percent_Identity=25.4587155963303, Blast_Score=129, Evalue=5e-31,
Organism=Escherichia coli, GI1787560, Length=426, Percent_Identity=26.2910798122066, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1786349, Length=350, Percent_Identity=26.2857142857143, Blast_Score=77, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI25144271, Length=430, Percent_Identity=28.1395348837209, Blast_Score=157, Evalue=1e-38,
Organism=Caenorhabditis elegans, GI32564660, Length=441, Percent_Identity=27.6643990929705, Blast_Score=146, Evalue=2e-35,
Organism=Caenorhabditis elegans, GI71992977, Length=444, Percent_Identity=26.1261261261261, Blast_Score=142, Evalue=4e-34,
Organism=Caenorhabditis elegans, GI25144274, Length=261, Percent_Identity=32.183908045977, Blast_Score=132, Evalue=4e-31,
Organism=Caenorhabditis elegans, GI17541228, Length=386, Percent_Identity=22.279792746114, Blast_Score=71, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6323470, Length=437, Percent_Identity=29.7482837528604, Blast_Score=174, Evalue=2e-44,
Organism=Saccharomyces cerevisiae, GI6324432, Length=437, Percent_Identity=29.5194508009153, Blast_Score=158, Evalue=1e-39,
Organism=Saccharomyces cerevisiae, GI6324386, Length=469, Percent_Identity=24.3070362473348, Blast_Score=107, Evalue=6e-24,
Organism=Drosophila melanogaster, GI21357415, Length=429, Percent_Identity=28.9044289044289, Blast_Score=152, Evalue=4e-37,
Organism=Drosophila melanogaster, GI28574759, Length=447, Percent_Identity=28.6353467561521, Blast_Score=151, Evalue=7e-37,
Organism=Drosophila melanogaster, GI161085790, Length=460, Percent_Identity=27.8260869565217, Blast_Score=150, Evalue=1e-36,
Organism=Drosophila melanogaster, GI21356575, Length=431, Percent_Identity=26.4501160092807, Blast_Score=137, Evalue=2e-32,
Organism=Drosophila melanogaster, GI281366494, Length=377, Percent_Identity=23.342175066313, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24667139, Length=377, Percent_Identity=23.342175066313, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24667143, Length=377, Percent_Identity=23.342175066313, Blast_Score=74, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YODT_BACSU (O34662)

Other databases:

- EMBL:   AF015775
- EMBL:   AF006665
- EMBL:   AL009126
- PIR:   F69904
- RefSeq:   NP_389855.1
- ProteinModelPortal:   O34662
- SMR:   O34662
- EnsemblBacteria:   EBBACT00000001201
- GeneID:   940050
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU19740
- NMPDR:   fig|224308.1.peg.1978
- GenoList:   BSU19740
- GeneTree:   EBGT00070000031850
- HOGENOM:   HBG725944
- OMA:   FENEPAE
- ProtClustDB:   PRK06917
- BioCyc:   BSUB:BSU19740-MONOMER
- InterPro:   IPR005814
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422
- Gene3D:   G3DSA:3.40.640.10
- Gene3D:   G3DSA:3.90.1150.10
- PANTHER:   PTHR11986

Pfam domain/function: PF00202 Aminotran_3; SSF53383 PyrdxlP-dep_Trfase_major

EC number: 2.6.1.13 [C]

Molecular weight: Translated: 48414; Mature: 48283

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: PS00600 AA_TRANSFER_CLASS_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSYLIKPELSSAYPVVSYAKGSYVYDQTGKKYLDGSSGAVTCNIGHGVRDVTEKLKEQL
CCCCCCCCCCCCCCCEEEECCCCEEECCCCCHHCCCCCCEEEEECCCCHHHHHHHHHHHH
DQVSFAYRSQFTSEPAEQLAALLAQELPGDVNWSFFVNSGSEAIETAMKIAIQYWQEKKQ
HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHH
TQKSIFLSRWSSYHGITLGALSLSGFYERRYRFTHLIERYPAISAPHIYRLNHETEEDFV
HHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHH
QTAADELDTMIKRIGSQFIAGFVAEPIIGAAGAAITPPPGYYERLSEVCRTHDVLFIADE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCEEEHHH
VMTGLGRTGRMLATEHWDTVPDIAVLGKGLGAGYAPIAAAVVSDSIIETIKQGSGVIMSG
HHHCCCCCCCEEEHHCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEC
HTYSAHPYSAKAALEVLRYVLKHGLIKQSEKKGAVLKKKLDEAASQSGIIGEVRGKGLLL
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCCCCEEEECCCEEEE
GIEFVADQKTKKVFPPEQAITQLIVSEAKKRGLIVYPSKAGIDSGEGDAVIIAPPFTISD
EEEEHHCCCCCCCCCHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCEEEEECCEECCC
GEMEELISIFSETVAAVEKNLKKD
CCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SSYLIKPELSSAYPVVSYAKGSYVYDQTGKKYLDGSSGAVTCNIGHGVRDVTEKLKEQL
CCCCCCCCCCCCCCEEEECCCCEEECCCCCHHCCCCCCEEEEECCCCHHHHHHHHHHHH
DQVSFAYRSQFTSEPAEQLAALLAQELPGDVNWSFFVNSGSEAIETAMKIAIQYWQEKKQ
HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHH
TQKSIFLSRWSSYHGITLGALSLSGFYERRYRFTHLIERYPAISAPHIYRLNHETEEDFV
HHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHH
QTAADELDTMIKRIGSQFIAGFVAEPIIGAAGAAITPPPGYYERLSEVCRTHDVLFIADE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCEEEHHH
VMTGLGRTGRMLATEHWDTVPDIAVLGKGLGAGYAPIAAAVVSDSIIETIKQGSGVIMSG
HHHCCCCCCCEEEHHCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEC
HTYSAHPYSAKAALEVLRYVLKHGLIKQSEKKGAVLKKKLDEAASQSGIIGEVRGKGLLL
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCCCCEEEECCCEEEE
GIEFVADQKTKKVFPPEQAITQLIVSEAKKRGLIVYPSKAGIDSGEGDAVIIAPPFTISD
EEEEHHCCCCCCCCCHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCEEEEECCEECCC
GEMEELISIFSETVAAVEKNLKKD
CCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: Pyridoxal Phosphate. [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: 2-Oxoglutarate; Ornithine [C]

Specific reaction: 2-Oxoglutarate + Ornithine --> L-Glutamate + L-Glutamate 5-semialdehyde [C]

General reaction: Amino group transfer [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377