Click here to switch to the map view.

The map label for this gene is yodJ

Identifier: 16079020

GI number: 16079020

Start: 2134566

End: 2135387

Strand: Reverse

Name: yodJ

Synonym: BSU19620

Alternate gene names: 16079020

Gene position: 2135387-2134566 (Counterclockwise)

Preceding gene: 16079021

Following gene: 16079017

Centisome position: 50.65

GC content: 41.97

Gene sequence:

>822_bases
ATGAAAAAGTCCGGTAAATGGTTCTCACTGGCTGCCGCTCTGAGTGTAACGGCAATAGTCGGAGCCGGCTGCAGCATGTC
GAACGGAGATGCTCAAAAGGATACGAAAACCACAGCAGAAACAAAGCAAACAGAACAAAAAACAGCTGACAGCAAAAAAT
CAAACACTCAAAACAGTGAGTTTTCATTGGAAAGCCAGTATTTCAATGATATTAAAAAAGTCGATGGTCTGGAAACCATT
CAAAATCCAGAAAATATACTCGCGCTTGTCAATAAACAATATGCACTGCCCGGAAACTATGAACCTAGCGATCTTGTCAT
ACCTGATGTAGAGTTTTCTTTTGAAGAAAAGATTCAAAAACGTTACATCAGAAAAGAAGCGGCCGACGCATTAAAAACAA
TGTTCGATGCTGCCAAAAAGGAAGGCTATGAACTGGCAGCTGTCTCAGGGTACCGTTCGTATGACAGACAGAAAGTCATT
TTTGACAATGAAGTAAGCCTAAAAGGGGAAAGGAAGGCAAAGGAAGCGGTCGCTTACCCGGGTGAAAGCGAGCATCAAAC
AGGCCTTGCGATGGACATTTCGAGCCGGAGCAATGGCTTTGAGCTAAATGAAGCGTTCGGAAGCACGGCAGACGGGAAAT
GGGTGCAGGACAATGCTTATAAATATGGCTTTATTATTCGCTATCCGAAAAATAAAGAAGATATCACGAAATATGAATAT
GAGCCATGGCATCTGCGCTATGTAGGCAAAAAAGCCGCAAAGGTCATCCAAGATAATGATTTAACGCTTGAAGAGTACTT
TGAAAAAGTGAAGAAAATTTAA

Upstream 100 bases:

>100_bases
CATTCCGTATCACAATAAAATATATCAAGAGGCGTGCTGGGTGCCGGCAGCCTCTTCTTTATGCATGCGGAAACGATTGA
TAAAAGGAAGGTAATGTAAT

Downstream 100 bases:

>100_bases
AATGAAAAGCCCGCTTACACTAGATAAGCGGGCTTCATTGTGTCTGGTGAATCTAGCATTTGTTCTATGCTTACCAGAAG
AATAAACCAGCCAGAGCCAC

Product: D-alanyl-D-alanine carboxypeptidase lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MKKSGKWFSLAAALSVTAIVGAGCSMSNGDAQKDTKTTAETKQTEQKTADSKKSNTQNSEFSLESQYFNDIKKVDGLETI
QNPENILALVNKQYALPGNYEPSDLVIPDVEFSFEEKIQKRYIRKEAADALKTMFDAAKKEGYELAAVSGYRSYDRQKVI
FDNEVSLKGERKAKEAVAYPGESEHQTGLAMDISSRSNGFELNEAFGSTADGKWVQDNAYKYGFIIRYPKNKEDITKYEY
EPWHLRYVGKKAAKVIQDNDLTLEEYFEKVKKI

Sequences:

>Translated_273_residues
MKKSGKWFSLAAALSVTAIVGAGCSMSNGDAQKDTKTTAETKQTEQKTADSKKSNTQNSEFSLESQYFNDIKKVDGLETI
QNPENILALVNKQYALPGNYEPSDLVIPDVEFSFEEKIQKRYIRKEAADALKTMFDAAKKEGYELAAVSGYRSYDRQKVI
FDNEVSLKGERKAKEAVAYPGESEHQTGLAMDISSRSNGFELNEAFGSTADGKWVQDNAYKYGFIIRYPKNKEDITKYEY
EPWHLRYVGKKAAKVIQDNDLTLEEYFEKVKKI
>Mature_273_residues
MKKSGKWFSLAAALSVTAIVGAGCSMSNGDAQKDTKTTAETKQTEQKTADSKKSNTQNSEFSLESQYFNDIKKVDGLETI
QNPENILALVNKQYALPGNYEPSDLVIPDVEFSFEEKIQKRYIRKEAADALKTMFDAAKKEGYELAAVSGYRSYDRQKVI
FDNEVSLKGERKAKEAVAYPGESEHQTGLAMDISSRSNGFELNEAFGSTADGKWVQDNAYKYGFIIRYPKNKEDITKYEY
EPWHLRYVGKKAAKVIQDNDLTLEEYFEKVKKI

Specific function: Unknown

COG id: COG1876

COG function: function code M; D-alanyl-D-alanine carboxypeptidase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M15B family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YODJ_BACSU (O34866)

Other databases:

- EMBL:   AF015775
- EMBL:   AF006665
- EMBL:   AL009126
- PIR:   F69903
- RefSeq:   NP_389843.1
- ProteinModelPortal:   O34866
- SMR:   O34866
- MEROPS:   M15.010
- EnsemblBacteria:   EBBACT00000001429
- GeneID:   940023
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU19620
- NMPDR:   fig|224308.1.peg.1966
- GenoList:   BSU19620
- GeneTree:   EBGT00050000001485
- HOGENOM:   HBG532071
- OMA:   YELTEAF
- ProtClustDB:   CLSK887431
- BioCyc:   BSUB:BSU19620-MONOMER
- GO:   GO:0006508
- InterPro:   IPR009045
- InterPro:   IPR003709
- Gene3D:   G3DSA:3.30.1380.10

Pfam domain/function: PF02557 VanY; SSF55166 Hedgehog_sig_N

EC number: NA

Molecular weight: Translated: 30854; Mature: 30854

Theoretical pI: Translated: 5.99; Mature: 5.99

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSGKWFSLAAALSVTAIVGAGCSMSNGDAQKDTKTTAETKQTEQKTADSKKSNTQNSE
CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
FSLESQYFNDIKKVDGLETIQNPENILALVNKQYALPGNYEPSDLVIPDVEFSFEEKIQK
EEHHHHHHHHHHHHCCHHHHCCHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCHHHHHHH
RYIRKEAADALKTMFDAAKKEGYELAAVSGYRSYDRQKVIFDNEVSLKGERKAKEAVAYP
HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHCCCCEEEECCCCCCCCCHHHHHHHCCC
GESEHQTGLAMDISSRSNGFELNEAFGSTADGKWVQDNAYKYGFIIRYPKNKEDITKYEY
CCCCCCCCEEEEECCCCCCCCHHHHHCCCCCCCEEECCCEEEEEEEECCCCCCCCHHCCC
EPWHLRYVGKKAAKVIQDNDLTLEEYFEKVKKI
CCEEEEEHHHHHHHHHCCCCCCHHHHHHHHHCC
>Mature Secondary Structure
MKKSGKWFSLAAALSVTAIVGAGCSMSNGDAQKDTKTTAETKQTEQKTADSKKSNTQNSE
CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
FSLESQYFNDIKKVDGLETIQNPENILALVNKQYALPGNYEPSDLVIPDVEFSFEEKIQK
EEHHHHHHHHHHHHCCHHHHCCHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCHHHHHHH
RYIRKEAADALKTMFDAAKKEGYELAAVSGYRSYDRQKVIFDNEVSLKGERKAKEAVAYP
HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHCCCCEEEECCCCCCCCCHHHHHHHCCC
GESEHQTGLAMDISSRSNGFELNEAFGSTADGKWVQDNAYKYGFIIRYPKNKEDITKYEY
CCCCCCCCEEEEECCCCCCCCHHHHHCCCCCCCEEECCCEEEEEEEECCCCCCCCHHCCC
EPWHLRYVGKKAAKVIQDNDLTLEEYFEKVKKI
CCEEEEEHHHHHHHHHCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377