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The map label for this gene is yodF

Identifier: 16079016

GI number: 16079016

Start: 2130377

End: 2131867

Strand: Direct

Name: yodF

Synonym: BSU19580

Alternate gene names: 16079016

Gene position: 2130377-2131867 (Clockwise)

Preceding gene: 255767458

Following gene: 16079018

Centisome position: 50.54

GC content: 45.14

Gene sequence:

>1491_bases
ATGCAAGGGAATCTGACTGCACTTCTCATTACTGCTATTATTGTTTTAACCGTTGTCTGTATCGGCTTTCTCGCCGGAAG
AGACAAATCCTCACGTACTTCTGTGGAAGAATGGTCTGTCGGCGGCAGACGCTTCGGCGGTCTTCTCGTCTGGTTTTTAG
TAGGCGCTGACCTTTATACGGCCTATACTTTCTTAGGGTTGACCAGTACTGCTTTTACAGGCGGAAGTGTTGCATTTTTC
GCCATTCCTTATTCTGTGTTGGCCTACTTTATCGCCTACTTCTTCTTGCCAAAACTTTGGAAAGTTGCGAAAATTCATAA
ATTAACAACACTCGCGGATTATGCCCGGGAACGTTTTAACAGTAAGCTTTTGGCAAGCCTCGTTGCCATCGTTGGGGTAC
TCATGCTTATTCCGTACATATGCCTTCAGCTGAGCGGCATTCAAGACACGCTTCAGGTTGCCGGCACTGGCTATATTAAC
GTAAAATTCGTTGTGATCATTTCATTTATTCTTGTTGCTCTTTACACATTCTTCAGCGGGATTAAAGGGCCCACATATAC
AGCCATCATTAAGGACATTTTAGTATGGGTCATTATGCTGTTTATGGTGGTGTCCCTCCCTCTCATTCATTTTAACGGCT
GGACGCCAATGATTGACACGTTAGTGAAGGAAGCGCCGCAAATGCTGACGATACCGTCAGAAGGGCCAAAAGGCATTCCT
TGGTTTATCACAGCATCTATTGTTTCCGCTCTGGCACTTTTTATGTGGGCACATGCCGCTACAGGTGTTTTCACGGCGAA
AAGCGCTGATGCAGTAAGAAAAAACAGCATGTTTTTGCCGCTTTATAATATCGTGTTAATTTTGGTTATTTTTCTTGGCT
TTATCGCCTTTCTTGTTCTGCCGGAAGATACAAATCCAAGGCTGGCGCTGCTGCATTTGATTCAAACATCTTACGGCGGC
GTGGCACAAGGCTTTGCATATGCCACTATCGCTCTTGCTTCATTAATACCTTGTTCCATTATGGCAATCGGCGCATCGAA
TTTATTCGCCAACAACCTATACCGGGATTTGATTCATCCGAATGTGTCGCAAAGCAAGCTGACTCTTGTCACACGTTCAA
TGGTGTTTGTTGTCATCGGTCTTGCGCTGCTGTTTGGAATGCTGTTCCCGACTGCCTTAGTGACACTTCAGCTATTAGGT
GTATCCGGTATGGTGCAAATCTTCCCTGCGATTGCTGTCAGCCTGTTCTGGAAAAACCAAACGAAAGAAGCAACGGTTAT
CGGATTATTAGCCGGCCTAGCGGTAACGTTTATTGTGTATATCACTCAATCCGCACATGGCATTTATGAAGGATTCTGGG
GATTGGCCGCCAACATGATCGCTGTGGTCATCCTGAATCCGCTGTTCGTTAAAAACGCGGGATCCAATCCTGTCATTGAA
GGTTTATTTGGCAAAAAACAAGACGCTAATCCAAATCAAAAGGGCGCATAA

Upstream 100 bases:

>100_bases
TGCCGTTTTTCCACTTTTGGCTGCTGCTGTGGATTATTGTTACGCCGTTATGCTCGTTTGGCATTTATCAGATGCAAAAA
AAAGATGGAGGACTTGAATA

Downstream 100 bases:

>100_bases
AAAAACCATACGCGGCAGCCGCGTATGGTTTTTTTTACATTTCTTTTTTCAGTGTTTCAATTGCCTTTTCCATTTGCGTA
TCATTATCAGACAGCTTCTT

Product: Na+/metabolite permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 496; Mature: 496

Protein sequence:

>496_residues
MQGNLTALLITAIIVLTVVCIGFLAGRDKSSRTSVEEWSVGGRRFGGLLVWFLVGADLYTAYTFLGLTSTAFTGGSVAFF
AIPYSVLAYFIAYFFLPKLWKVAKIHKLTTLADYARERFNSKLLASLVAIVGVLMLIPYICLQLSGIQDTLQVAGTGYIN
VKFVVIISFILVALYTFFSGIKGPTYTAIIKDILVWVIMLFMVVSLPLIHFNGWTPMIDTLVKEAPQMLTIPSEGPKGIP
WFITASIVSALALFMWAHAATGVFTAKSADAVRKNSMFLPLYNIVLILVIFLGFIAFLVLPEDTNPRLALLHLIQTSYGG
VAQGFAYATIALASLIPCSIMAIGASNLFANNLYRDLIHPNVSQSKLTLVTRSMVFVVIGLALLFGMLFPTALVTLQLLG
VSGMVQIFPAIAVSLFWKNQTKEATVIGLLAGLAVTFIVYITQSAHGIYEGFWGLAANMIAVVILNPLFVKNAGSNPVIE
GLFGKKQDANPNQKGA

Sequences:

>Translated_496_residues
MQGNLTALLITAIIVLTVVCIGFLAGRDKSSRTSVEEWSVGGRRFGGLLVWFLVGADLYTAYTFLGLTSTAFTGGSVAFF
AIPYSVLAYFIAYFFLPKLWKVAKIHKLTTLADYARERFNSKLLASLVAIVGVLMLIPYICLQLSGIQDTLQVAGTGYIN
VKFVVIISFILVALYTFFSGIKGPTYTAIIKDILVWVIMLFMVVSLPLIHFNGWTPMIDTLVKEAPQMLTIPSEGPKGIP
WFITASIVSALALFMWAHAATGVFTAKSADAVRKNSMFLPLYNIVLILVIFLGFIAFLVLPEDTNPRLALLHLIQTSYGG
VAQGFAYATIALASLIPCSIMAIGASNLFANNLYRDLIHPNVSQSKLTLVTRSMVFVVIGLALLFGMLFPTALVTLQLLG
VSGMVQIFPAIAVSLFWKNQTKEATVIGLLAGLAVTFIVYITQSAHGIYEGFWGLAANMIAVVILNPLFVKNAGSNPVIE
GLFGKKQDANPNQKGA
>Mature_496_residues
MQGNLTALLITAIIVLTVVCIGFLAGRDKSSRTSVEEWSVGGRRFGGLLVWFLVGADLYTAYTFLGLTSTAFTGGSVAFF
AIPYSVLAYFIAYFFLPKLWKVAKIHKLTTLADYARERFNSKLLASLVAIVGVLMLIPYICLQLSGIQDTLQVAGTGYIN
VKFVVIISFILVALYTFFSGIKGPTYTAIIKDILVWVIMLFMVVSLPLIHFNGWTPMIDTLVKEAPQMLTIPSEGPKGIP
WFITASIVSALALFMWAHAATGVFTAKSADAVRKNSMFLPLYNIVLILVIFLGFIAFLVLPEDTNPRLALLHLIQTSYGG
VAQGFAYATIALASLIPCSIMAIGASNLFANNLYRDLIHPNVSQSKLTLVTRSMVFVVIGLALLFGMLFPTALVTLQLLG
VSGMVQIFPAIAVSLFWKNQTKEATVIGLLAGLAVTFIVYITQSAHGIYEGFWGLAANMIAVVILNPLFVKNAGSNPVIE
GLFGKKQDANPNQKGA

Specific function: Unknown

COG id: COG0591

COG function: function code ER; Na+/proline symporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YODF_BACSU (O34745)

Other databases:

- EMBL:   AF006665
- EMBL:   AF015775
- EMBL:   AL009126
- PIR:   C69903
- RefSeq:   NP_389839.1
- ProteinModelPortal:   O34745
- EnsemblBacteria:   EBBACT00000003691
- GeneID:   940028
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU19580
- NMPDR:   fig|224308.1.peg.1962
- GenoList:   BSU19580
- GeneTree:   EBGT00070000031986
- HOGENOM:   HBG670534
- OMA:   GIVCGTW
- ProtClustDB:   CLSK865097
- BioCyc:   BSUB:BSU19580-MONOMER
- InterPro:   IPR001734
- PANTHER:   PTHR11819

Pfam domain/function: PF00474 SSF

EC number: NA

Molecular weight: Translated: 53766; Mature: 53766

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: PS50283 NA_SOLUT_SYMP_3

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xd0a7380)-; HASH(0xff1d1d4)-; HASH(0xe8d112c)-; HASH(0xfbbae4c)-; HASH(0xfb0be34)-; HASH(0xf717e10)-; HASH(0xf63f04c)-; HASH(0xf860700)-; HASH(0xc7be5dc)-; HASH(0xd0abbbc)-; HASH(0xfd7de2c)-; HASH(0xf928250)-; HASH(0xf75846c)-;

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQGNLTALLITAIIVLTVVCIGFLAGRDKSSRTSVEEWSVGGRRFGGLLVWFLVGADLYT
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHH
AYTFLGLTSTAFTGGSVAFFAIPYSVLAYFIAYFFLPKLWKVAKIHKLTTLADYARERFN
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SKLLASLVAIVGVLMLIPYICLQLSGIQDTLQVAGTGYINVKFVVIISFILVALYTFFSG
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC
IKGPTYTAIIKDILVWVIMLFMVVSLPLIHFNGWTPMIDTLVKEAPQMLTIPSEGPKGIP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHCCCCEEECCCCCCCCCC
WFITASIVSALALFMWAHAATGVFTAKSADAVRKNSMFLPLYNIVLILVIFLGFIAFLVL
HHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC
PEDTNPRLALLHLIQTSYGGVAQGFAYATIALASLIPCSIMAIGASNLFANNLYRDLIHP
CCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCC
NVSQSKLTLVTRSMVFVVIGLALLFGMLFPTALVTLQLLGVSGMVQIFPAIAVSLFWKNQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TKEATVIGLLAGLAVTFIVYITQSAHGIYEGFWGLAANMIAVVILNPLFVKNAGSNPVIE
CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHH
GLFGKKQDANPNQKGA
HHCCCCCCCCCCCCCH
>Mature Secondary Structure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HHCCCCCCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377