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The map label for this gene is yodH

Identifier: 16079018

GI number: 16079018

Start: 2133455

End: 2134156

Strand: Direct

Name: yodH

Synonym: BSU19600

Alternate gene names: 16079018

Gene position: 2133455-2134156 (Clockwise)

Preceding gene: 16079016

Following gene: 16079019

Centisome position: 50.61

GC content: 44.16

Gene sequence:

>702_bases
TTGAGCCGATATTTAGAAATGCTGTCCTTATTCGGTGTCGCAGGGGCGCACCCAGGCGGGCTGGCTTTTTCAAAAGCGGT
CTTGCAAAAGGCTGCACCCTCTCCGGATCAGCCGATTCTTGATGCCGGATGCGGAACAGGGCAAACGGCGGCTTATTTAG
GACATTTGCTGTATCCTGTAACAGTCGTTGATAAAGATCCTATTATGCTTGAGAAAGCGAAAAAAAGATTTGCGAATGAA
GGGCTTGCCATCCCTGCATATCAGGCGGAGCTGGAACATCTCCCGTTTTCTTCTGAGTCCTTTTCCTGCGTCCTGTCAGA
ATCGGTCCTCAGTTTTTCACGCCTGACATCCTCTCTTCAAGAAATTTCAAGAGTTTTAAAACCCAGCGGGATGCTGATTG
GTATCGAAGCTGCTTTAAAAAAACCAATGCCCCCTGCAGAAAAGAAGCAAATGATGGATTTTTACGGATTTACTTGCTTA
CATGAAGAAAGCGAATGGCATAAACTCCTAAGATCCTATGGCTTTCAAAAAACAGAAGCGATGTCACTTCTTCCGGAAGA
CATGGAATTTGAACCAACCACAGAAATGGATTTATCGCAAACGATTGATCCCATCTATTACGATACGCTTCAAACACATT
ATCAGCTCATGCAGTTATATAGTGAGTACATGGGTCATTGTATTTTTATCGCGTACAAGTAA

Upstream 100 bases:

>100_bases
GTCAACTCGGAGCAGAAATGAAAGAGAAACGCCCTTCTTTTGCTTTTCATAAACCTATGTCTTTATACGACATATGATAA
GGAAAAAGGAGGATTCGATA

Downstream 100 bases:

>100_bases
AACGGCGTATCGCCCCCTGTTTTCGTCCAACCTTTTTTTCCTATCTATCATATGCTGATAGAAAGTCAGGATAGGAGGGG
AACAATATTGGAGAGATATT

Product: S-adenosylmethionine-dependent methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 232

Protein sequence:

>233_residues
MSRYLEMLSLFGVAGAHPGGLAFSKAVLQKAAPSPDQPILDAGCGTGQTAAYLGHLLYPVTVVDKDPIMLEKAKKRFANE
GLAIPAYQAELEHLPFSSESFSCVLSESVLSFSRLTSSLQEISRVLKPSGMLIGIEAALKKPMPPAEKKQMMDFYGFTCL
HEESEWHKLLRSYGFQKTEAMSLLPEDMEFEPTTEMDLSQTIDPIYYDTLQTHYQLMQLYSEYMGHCIFIAYK

Sequences:

>Translated_233_residues
MSRYLEMLSLFGVAGAHPGGLAFSKAVLQKAAPSPDQPILDAGCGTGQTAAYLGHLLYPVTVVDKDPIMLEKAKKRFANE
GLAIPAYQAELEHLPFSSESFSCVLSESVLSFSRLTSSLQEISRVLKPSGMLIGIEAALKKPMPPAEKKQMMDFYGFTCL
HEESEWHKLLRSYGFQKTEAMSLLPEDMEFEPTTEMDLSQTIDPIYYDTLQTHYQLMQLYSEYMGHCIFIAYK
>Mature_232_residues
SRYLEMLSLFGVAGAHPGGLAFSKAVLQKAAPSPDQPILDAGCGTGQTAAYLGHLLYPVTVVDKDPIMLEKAKKRFANEG
LAIPAYQAELEHLPFSSESFSCVLSESVLSFSRLTSSLQEISRVLKPSGMLIGIEAALKKPMPPAEKKQMMDFYGFTCLH
EESEWHKLLRSYGFQKTEAMSLLPEDMEFEPTTEMDLSQTIDPIYYDTLQTHYQLMQLYSEYMGHCIFIAYK

Specific function: Bioc Is Involved In An Early, But Chemically Unexplored, Step In The Conversion Of Pimelic Acid To Biotin. [C]

COG id: COG0500

COG function: function code QR; SAM-dependent methyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YODH_BACSU (O34954)

Other databases:

- EMBL:   AF015775
- EMBL:   AF006665
- EMBL:   AL009126
- PIR:   D69903
- RefSeq:   NP_389841.1
- ProteinModelPortal:   O34954
- SMR:   O34954
- EnsemblBacteria:   EBBACT00000003233
- GeneID:   940101
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU19600
- NMPDR:   fig|224308.1.peg.1964
- GenoList:   BSU19600
- GeneTree:   EBGT00050000000513
- HOGENOM:   HBG339868
- OMA:   TGQTAAY
- ProtClustDB:   CLSK2518239
- BioCyc:   BSUB:BSU19600-MONOMER
- InterPro:   IPR013216

Pfam domain/function: PF08241 Methyltransf_11

EC number: NA

Molecular weight: Translated: 26069; Mature: 25938

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRYLEMLSLFGVAGAHPGGLAFSKAVLQKAAPSPDQPILDAGCGTGQTAAYLGHLLYPV
CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHE
TVVDKDPIMLEKAKKRFANEGLAIPAYQAELEHLPFSSESFSCVLSESVLSFSRLTSSLQ
EEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
EISRVLKPSGMLIGIEAALKKPMPPAEKKQMMDFYGFTCLHEESEWHKLLRSYGFQKTEA
HHHHHHCCCCCEEEHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHH
MSLLPEDMEFEPTTEMDLSQTIDPIYYDTLQTHYQLMQLYSEYMGHCIFIAYK
HHHCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC
>Mature Secondary Structure 
SRYLEMLSLFGVAGAHPGGLAFSKAVLQKAAPSPDQPILDAGCGTGQTAAYLGHLLYPV
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHE
TVVDKDPIMLEKAKKRFANEGLAIPAYQAELEHLPFSSESFSCVLSESVLSFSRLTSSLQ
EEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
EISRVLKPSGMLIGIEAALKKPMPPAEKKQMMDFYGFTCLHEESEWHKLLRSYGFQKTEA
HHHHHHCCCCCEEEHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHH
MSLLPEDMEFEPTTEMDLSQTIDPIYYDTLQTHYQLMQLYSEYMGHCIFIAYK
HHHCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377