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The map label for this gene is sodF

Identifier: 16078993

GI number: 16078993

Start: 2104056

End: 2104901

Strand: Direct

Name: sodF

Synonym: BSU19330

Alternate gene names: 16078993

Gene position: 2104056-2104901 (Clockwise)

Preceding gene: 50812246

Following gene: 16078995

Centisome position: 49.91

GC content: 43.97

Gene sequence:

>846_bases
ATGAAACGTGAATCTTATCAAGCGGAGATGTTCAATTGGTGTGAAGCCCTGAAAGATCAGATTCAAAAGCGAGGTCAGCT
TGACCAGTTTGAAGATCAAATCGACAAGATGATTGAGGCTCTGGAAGATGACCAAACAACAGAAGAAGATTGGTATAAAC
AGGCCGCTGCCCTTTATCGGGATATTACAGAATCAGATGATACAAGTGAAAGACGCGCTTATGTCCCTATAGGGAAACAC
GTGCTGCCAAAGCTTCCTTACAAATACTCCGCCTTAGAACCTTATATATCACGCGATATTATGATCCTTCATCATACAAA
ACATCATCAAAGCTATGTCGATGGCCTGAACAAAGCAGAATCAGAGCTTAAAAAAGCGAGAGCGACAAAGAATTATGACT
TAATCACTCATTGGGAAAGAGAGCTTGCGTTCCATGGAGCAGGCCATTATTTGCATAGTATTTTTTGGTTTTCTATGCAT
CCAAACGGAAAACGGCGTCCTACAGGGGCATTGTTCCAAATGATAGACCTTTCATTTGGAAGCTATTCCGCTTTTAAAGA
ACATTTTACCCAGGCCTCTAAAAAAGTGGAAGGCGTCGGCTGGGCCATTCTGGTCTGGGCACCTCGATCAGGACGGCTGG
AGATTTTAACGGCAGAAAAACACCAGCTCTTTAGCCAATGGGATGTGATCCCCCTTTTACCGCTTGACGTATGGGAGCAT
GCCTACTATTTGCAATACAAAAATGACCGGGCCAGCTATGTCGATCACTGGTGGAATGTCGTGGATTGGCGCGAGGCTGA
AAAACGTTTTGAGCAGGCAAAAGAAGTCGTTTGGAAGCTCTATTAA

Upstream 100 bases:

>100_bases
TTGCCGAAGCAATTTTATATTCGCTATCACAGTTATCCATATGTATTCTCTTTGCTGGCTGTCGGGAAGTATTTAGATTC
TATTGAAAAGGAGACAGCAA

Downstream 100 bases:

>100_bases
AAAAAGCCCCCTTTCCTCGGGGGCTTCGTGTGTTAAAAAATACCTATCACATGCAAAAACACGATGATGATGGCAACAGG
AGATAGATATCGAATGAGCA

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MKRESYQAEMFNWCEALKDQIQKRGQLDQFEDQIDKMIEALEDDQTTEEDWYKQAAALYRDITESDDTSERRAYVPIGKH
VLPKLPYKYSALEPYISRDIMILHHTKHHQSYVDGLNKAESELKKARATKNYDLITHWERELAFHGAGHYLHSIFWFSMH
PNGKRRPTGALFQMIDLSFGSYSAFKEHFTQASKKVEGVGWAILVWAPRSGRLEILTAEKHQLFSQWDVIPLLPLDVWEH
AYYLQYKNDRASYVDHWWNVVDWREAEKRFEQAKEVVWKLY

Sequences:

>Translated_281_residues
MKRESYQAEMFNWCEALKDQIQKRGQLDQFEDQIDKMIEALEDDQTTEEDWYKQAAALYRDITESDDTSERRAYVPIGKH
VLPKLPYKYSALEPYISRDIMILHHTKHHQSYVDGLNKAESELKKARATKNYDLITHWERELAFHGAGHYLHSIFWFSMH
PNGKRRPTGALFQMIDLSFGSYSAFKEHFTQASKKVEGVGWAILVWAPRSGRLEILTAEKHQLFSQWDVIPLLPLDVWEH
AYYLQYKNDRASYVDHWWNVVDWREAEKRFEQAKEVVWKLY
>Mature_281_residues
MKRESYQAEMFNWCEALKDQIQKRGQLDQFEDQIDKMIEALEDDQTTEEDWYKQAAALYRDITESDDTSERRAYVPIGKH
VLPKLPYKYSALEPYISRDIMILHHTKHHQSYVDGLNKAESELKKARATKNYDLITHWERELAFHGAGHYLHSIFWFSMH
PNGKRRPTGALFQMIDLSFGSYSAFKEHFTQASKKVEGVGWAILVWAPRSGRLEILTAEKHQLFSQWDVIPLLPLDVWEH
AYYLQYKNDRASYVDHWWNVVDWREAEKRFEQAKEVVWKLY

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family

Homologues:

Organism=Homo sapiens, GI67782307, Length=198, Percent_Identity=44.4444444444444, Blast_Score=175, Evalue=4e-44,
Organism=Homo sapiens, GI67782305, Length=198, Percent_Identity=44.4444444444444, Blast_Score=175, Evalue=4e-44,
Organism=Homo sapiens, GI67782309, Length=198, Percent_Identity=37.3737373737374, Blast_Score=127, Evalue=8e-30,
Organism=Escherichia coli, GI1787946, Length=192, Percent_Identity=38.0208333333333, Blast_Score=128, Evalue=4e-31,
Organism=Escherichia coli, GI1790342, Length=211, Percent_Identity=36.4928909952607, Blast_Score=127, Evalue=7e-31,
Organism=Caenorhabditis elegans, GI17506561, Length=198, Percent_Identity=39.8989898989899, Blast_Score=159, Evalue=1e-39,
Organism=Caenorhabditis elegans, GI17569479, Length=197, Percent_Identity=38.5786802030457, Blast_Score=149, Evalue=1e-36,
Organism=Saccharomyces cerevisiae, GI6321796, Length=218, Percent_Identity=37.6146788990826, Blast_Score=147, Evalue=2e-36,
Organism=Drosophila melanogaster, GI17136812, Length=200, Percent_Identity=43.5, Blast_Score=176, Evalue=2e-44,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): SODF_BACSU (O35023)

Other databases:

- EMBL:   AF027868
- EMBL:   AL009126
- PIR:   C69709
- RefSeq:   NP_389815.1
- ProteinModelPortal:   O35023
- SMR:   O35023
- EnsemblBacteria:   EBBACT00000003745
- GeneID:   939503
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU19330
- NMPDR:   fig|224308.1.peg.1938
- GenoList:   BSU19330
- GeneTree:   EBGT00050000001142
- HOGENOM:   HBG507761
- OMA:   IPILVID
- PhylomeDB:   O35023
- ProtClustDB:   CLSK887423
- BioCyc:   BSUB:BSU19330-MONOMER
- BRENDA:   1.15.1.1
- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831
- PANTHER:   PTHR11404
- PRINTS:   PR01703

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N; SSF46609 SODismutase; SSF54719 SODismutase

EC number: =1.15.1.1

Molecular weight: Translated: 33477; Mature: 33477

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRESYQAEMFNWCEALKDQIQKRGQLDQFEDQIDKMIEALEDDQTTEEDWYKQAAALYR
CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
DITESDDTSERRAYVPIGKHVLPKLPYKYSALEPYISRDIMILHHTKHHQSYVDGLNKAE
HHCCCCCCCCCEEECCCCHHHHHCCCCCHHHHCHHHCCCEEEEECCHHHHHHHHHHHHHH
SELKKARATKNYDLITHWERELAFHGAGHYLHSIFWFSMHPNGKRRPTGALFQMIDLSFG
HHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHEEECCCCCCCCHHHHHHHHHCCCC
SYSAFKEHFTQASKKVEGVGWAILVWAPRSGRLEILTAEKHQLFSQWDVIPLLPLDVWEH
CHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEECHHHHHHHHCCCCEECHHHHHCC
AYYLQYKNDRASYVDHWWNVVDWREAEKRFEQAKEVVWKLY
EEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKRESYQAEMFNWCEALKDQIQKRGQLDQFEDQIDKMIEALEDDQTTEEDWYKQAAALYR
CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
DITESDDTSERRAYVPIGKHVLPKLPYKYSALEPYISRDIMILHHTKHHQSYVDGLNKAE
HHCCCCCCCCCEEECCCCHHHHHCCCCCHHHHCHHHCCCEEEEECCHHHHHHHHHHHHHH
SELKKARATKNYDLITHWERELAFHGAGHYLHSIFWFSMHPNGKRRPTGALFQMIDLSFG
HHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHEEECCCCCCCCHHHHHHHHHCCCC
SYSAFKEHFTQASKKVEGVGWAILVWAPRSGRLEILTAEKHQLFSQWDVIPLLPLDVWEH
CHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEECHHHHHHHHCCCCEECHHHHHCC
AYYLQYKNDRASYVDHWWNVVDWREAEKRFEQAKEVVWKLY
EEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377