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The map label for this gene is yobD

Identifier: 16078945

GI number: 16078945

Start: 2056278

End: 2056616

Strand: Direct

Name: yobD

Synonym: BSU18850

Alternate gene names: 16078945

Gene position: 2056278-2056616 (Clockwise)

Preceding gene: 16078942

Following gene: 16078947

Centisome position: 48.78

GC content: 33.92

Gene sequence:

>339_bases
ATGTATTGCCAAAGATTACGGCAATTACGAAAGGCACACAAATTAACAATGGAACAGTTAGCTGAGAAAATTGGAATTGC
AAAATCAAGTTACGGCGGGTATGAAGCTGAAAGCAAAAAACCACCATTGGACAAGTTGGTTATTTTAGCTAGACTATATG
ATGTTTCAGTTGATTACATACTTGGATTAACAGATGATCCTGATCCTAAAGTGGAAAGAAAAAATCTAAAAGAGTTTTTA
GAAAAACCAGATATTCACTGGGATGGATATAAACTTACCCCTGAGATATTAGATCCTATACGGAAAATTTTGAAGTTGGT
TACTGCAAACAACAATTAA

Upstream 100 bases:

>100_bases
AATCGTGAAAATTTTGAAATTCTTTTGAGATTTTTTATTTTATTGAGAAATGAAAGCTCATATAATTGAACTAGATGGTT
TTGGGAGGCATTTATTCAAA

Downstream 100 bases:

>100_bases
AAAAGCCCTCATAAGGGCTTTTGCATAAAACAATTATTTCATTGAATTTTCTGGACTCATTTCAAGAAGTTTATTCATGA
TGATAGCTAAACTTTCACCA

Product: Xre family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 112; Mature: 112

Protein sequence:

>112_residues
MYCQRLRQLRKAHKLTMEQLAEKIGIAKSSYGGYEAESKKPPLDKLVILARLYDVSVDYILGLTDDPDPKVERKNLKEFL
EKPDIHWDGYKLTPEILDPIRKILKLVTANNN

Sequences:

>Translated_112_residues
MYCQRLRQLRKAHKLTMEQLAEKIGIAKSSYGGYEAESKKPPLDKLVILARLYDVSVDYILGLTDDPDPKVERKNLKEFL
EKPDIHWDGYKLTPEILDPIRKILKLVTANNN
>Mature_112_residues
MYCQRLRQLRKAHKLTMEQLAEKIGIAKSSYGGYEAESKKPPLDKLVILARLYDVSVDYILGLTDDPDPKVERKNLKEFL
EKPDIHWDGYKLTPEILDPIRKILKLVTANNN

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YOBD_BACSU (O34647)

Other databases:

- EMBL:   AF027868
- EMBL:   AL009126
- PIR:   D69898
- RefSeq:   NP_389766.1
- HSSP:   P06533
- ProteinModelPortal:   O34647
- SMR:   O34647
- EnsemblBacteria:   EBBACT00000003981
- GeneID:   939975
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU18850
- NMPDR:   fig|224308.1.peg.1889
- GenoList:   BSU18850
- GeneTree:   EBGT00070000032131
- HOGENOM:   HBG727458
- OMA:   RTENPNG
- BioCyc:   BSUB:BSU18850-MONOMER
- GO:   GO:0006350
- InterPro:   IPR001387
- InterPro:   IPR010982
- SMART:   SM00530

Pfam domain/function: PF01381 HTH_3; SSF47413 Lambda_like_DNA

EC number: NA

Molecular weight: Translated: 12967; Mature: 12967

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYCQRLRQLRKAHKLTMEQLAEKIGIAKSSYGGYEAESKKPPLDKLVILARLYDVSVDYI
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHE
LGLTDDPDPKVERKNLKEFLEKPDIHWDGYKLTPEILDPIRKILKLVTANNN
ECCCCCCCCCCCHHHHHHHHHCCCCCCCCEEECHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MYCQRLRQLRKAHKLTMEQLAEKIGIAKSSYGGYEAESKKPPLDKLVILARLYDVSVDYI
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHE
LGLTDDPDPKVERKNLKEFLEKPDIHWDGYKLTPEILDPIRKILKLVTANNN
ECCCCCCCCCCCHHHHHHHHHCCCCCCCCEEECHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377