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The map label for this gene is ymdA

Identifier: 16078759

GI number: 16078759

Start: 1767310

End: 1768872

Strand: Direct

Name: ymdA

Synonym: BSU16960

Alternate gene names: NA

Gene position: 1767310-1768872 (Clockwise)

Preceding gene: 16078758

Following gene: 255767390

Centisome position: 41.92

GC content: 46.07

Gene sequence:

>1563_bases
ATGACCCCAATTATGATGGTTCTCATCTCCATTTTGCTGATTCTACTCGGTTTAGTTGTTGGCTACTTTGTTCGTAAAAC
CATTGCCGAAGCGAAAATTGCGGGCGCACGCGGTGCAGCCGAGCAAATTCTTGAAGATGCGAAGCGTGATGCTGAAGCAC
TGAAAAAAGAAGCTCTGCTTGAAGCAAAGGATGAAATCCACAAACTTCGAATAGATGCTGAACAGGAAGTTCGTGAAAGA
CGAAATGAGCTTCAAAAACAAGAAAACCGTTTACTCCAAAAGGAGGAAAACCTTGATCGCAAACATGAGGGAATTGATAA
ACGGGAAGCGATGTTGGAGAAGAAAGATCATTCTCTGAATGAACGACAACAACATATTGAAGAGATGGAAAGCAAAGTGG
ATGAGATGATTCGTATGCAGCAGTCTGAGTTGGAACGAATTTCGAGTCTGACTCGTGACGAAGCGAAACAAATCATTCTT
GAGCGGGTTGAAAACGAGCTTTCACATGACATCGCCATCATGACAAAAGAAACTGAAAACCGTGCGAAAGAAGAGGCGGA
TAAGAAAGCGAAAAACATTCTTTCACTCGCCTTACAGCGCTGCGCAGCGGACCACGTTGCCGAAACAACGGTATCAGTTG
TCAATCTTCCAAATGATGAGATGAAAGGACGTATCATCGGACGGGAAGGGCGTAACATTCGTACGCTTGAAACGCTGACA
GGAATTGACCTGATTATTGATGATACGCCTGAAGCTGTCATTCTTTCCGGATTTGATCCGATCAGACGTGAGACAGCCAG
AATTGCTCTTGATAAACTCGTTCAGGATGGCCGTATTCATCCGGCACGGATTGAAGAAATGGTTGAAAAATCTCGCCGCG
AGGTCGATGACTATATTCGTGAGATGGGTGAGCAAACGACATTTGAGGTTGGCGTTCATGGCCTCCACCCAGATCTCATC
AAGATCCTCGGCCGCTTAAAGTTCCGTACAAGCTACGGTCAAAATGTGCTTAAGCATTCCATGGAAGTCGCATTCTTGGC
CGGTCTAATGGCATCGGAGCTTGGTGAAGACGCAAAGCTTGCTAAACGTGCGGGTCTTCTTCACGACATCGGGAAAGCAA
TTGACCATGAAGTAGAAGGAAGCCACGTTGAGATCGGGGTAGAGCTTGCGACCAAATATAAAGAGCACCCAGTCGTGATT
AACAGTATTGCATCACACCACGGGGACGAGGAGCCGACTTCCATTATTGCTGTACTGGTAGCTGCAGCAGATGCGCTTTC
CGCTGCAAGACCTGGCGCAAGAAGTGAGACGCTCGAGAATTATATTCGAAGACTTGAAAAACTTGAAGAAATTTCTGAGT
CCTACGAAGGTGTTGAAAAATCATTTGCCATTCAGGCTGGACGCGAAGTGCGAATTATGGTGAAGCCGGATTCAATTAAT
GATCTTGAGGCTCATCGACTGGCGCGAGATATCCGCAAGCGAATTGAGGACGAGCTCGATTATCCAGGTCATATTAAGGT
GACAGTAATCAGAGAGACTCGAGCCGTAGAGTATGCAAAATAA

Upstream 100 bases:

>100_bases
TCATTCCCTGTGAAGGTTCTGTATGTTGAGAAAACTAGACAATGTACATGCCGACACTTTTTAAGCAACAACCAAGTTCA
TAGCAAGAGGAGGTGAAAGT

Downstream 100 bases:

>100_bases
AGTGATGCGCTAAGCATCACTTTATTTTTTTGACGGCAAGGAATTTTCAAGAAGAAAGGATTTACAAAATGAGAATTTTA
TTTATCGGAGATGTTGTCGG

Product: phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 520; Mature: 519

Protein sequence:

>520_residues
MTPIMMVLISILLILLGLVVGYFVRKTIAEAKIAGARGAAEQILEDAKRDAEALKKEALLEAKDEIHKLRIDAEQEVRER
RNELQKQENRLLQKEENLDRKHEGIDKREAMLEKKDHSLNERQQHIEEMESKVDEMIRMQQSELERISSLTRDEAKQIIL
ERVENELSHDIAIMTKETENRAKEEADKKAKNILSLALQRCAADHVAETTVSVVNLPNDEMKGRIIGREGRNIRTLETLT
GIDLIIDDTPEAVILSGFDPIRRETARIALDKLVQDGRIHPARIEEMVEKSRREVDDYIREMGEQTTFEVGVHGLHPDLI
KILGRLKFRTSYGQNVLKHSMEVAFLAGLMASELGEDAKLAKRAGLLHDIGKAIDHEVEGSHVEIGVELATKYKEHPVVI
NSIASHHGDEEPTSIIAVLVAAADALSAARPGARSETLENYIRRLEKLEEISESYEGVEKSFAIQAGREVRIMVKPDSIN
DLEAHRLARDIRKRIEDELDYPGHIKVTVIRETRAVEYAK

Sequences:

>Translated_520_residues
MTPIMMVLISILLILLGLVVGYFVRKTIAEAKIAGARGAAEQILEDAKRDAEALKKEALLEAKDEIHKLRIDAEQEVRER
RNELQKQENRLLQKEENLDRKHEGIDKREAMLEKKDHSLNERQQHIEEMESKVDEMIRMQQSELERISSLTRDEAKQIIL
ERVENELSHDIAIMTKETENRAKEEADKKAKNILSLALQRCAADHVAETTVSVVNLPNDEMKGRIIGREGRNIRTLETLT
GIDLIIDDTPEAVILSGFDPIRRETARIALDKLVQDGRIHPARIEEMVEKSRREVDDYIREMGEQTTFEVGVHGLHPDLI
KILGRLKFRTSYGQNVLKHSMEVAFLAGLMASELGEDAKLAKRAGLLHDIGKAIDHEVEGSHVEIGVELATKYKEHPVVI
NSIASHHGDEEPTSIIAVLVAAADALSAARPGARSETLENYIRRLEKLEEISESYEGVEKSFAIQAGREVRIMVKPDSIN
DLEAHRLARDIRKRIEDELDYPGHIKVTVIRETRAVEYAK
>Mature_519_residues
TPIMMVLISILLILLGLVVGYFVRKTIAEAKIAGARGAAEQILEDAKRDAEALKKEALLEAKDEIHKLRIDAEQEVRERR
NELQKQENRLLQKEENLDRKHEGIDKREAMLEKKDHSLNERQQHIEEMESKVDEMIRMQQSELERISSLTRDEAKQIILE
RVENELSHDIAIMTKETENRAKEEADKKAKNILSLALQRCAADHVAETTVSVVNLPNDEMKGRIIGREGRNIRTLETLTG
IDLIIDDTPEAVILSGFDPIRRETARIALDKLVQDGRIHPARIEEMVEKSRREVDDYIREMGEQTTFEVGVHGLHPDLIK
ILGRLKFRTSYGQNVLKHSMEVAFLAGLMASELGEDAKLAKRAGLLHDIGKAIDHEVEGSHVEIGVELATKYKEHPVVIN
SIASHHGDEEPTSIIAVLVAAADALSAARPGARSETLENYIRRLEKLEEISESYEGVEKSFAIQAGREVRIMVKPDSIND
LEAHRLARDIRKRIEDELDYPGHIKVTVIRETRAVEYAK

Specific function: Catalyzes the hydrolysis of both 2',3'-cyclic AMP and 2',3'-cyclic GMP into 3'-AMP and 3'-GMP, respectively, at the 3'- terminal of RNA [H]

COG id: COG1418

COG function: function code R; Predicted HD superfamily hydrolase

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 KH domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017705
- InterPro:   IPR022711
- InterPro:   IPR004087
- InterPro:   IPR004088
- InterPro:   IPR018111
- InterPro:   IPR003607
- InterPro:   IPR006675 [H]

Pfam domain/function: PF12072 DUF3552; PF00013 KH_1 [H]

EC number: =3.1.4.16 [H]

Molecular weight: Translated: 58920; Mature: 58789

Theoretical pI: Translated: 5.48; Mature: 5.48

Prosite motif: PS50084 KH_TYPE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPIMMVLISILLILLGLVVGYFVRKTIAEAKIAGARGAAEQILEDAKRDAEALKKEALL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
EAKDEIHKLRIDAEQEVRERRNELQKQENRLLQKEENLDRKHEGIDKREAMLEKKDHSLN
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHCCCHH
ERQQHIEEMESKVDEMIRMQQSELERISSLTRDEAKQIILERVENELSHDIAIMTKETEN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCHHH
RAKEEADKKAKNILSLALQRCAADHVAETTVSVVNLPNDEMKGRIIGREGRNIRTLETLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHCCCEECCCCCCCCHHHHHC
GIDLIIDDTPEAVILSGFDPIRRETARIALDKLVQDGRIHPARIEEMVEKSRREVDDYIR
CCEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
EMGEQTTFEVGVHGLHPDLIKILGRLKFRTSYGQNVLKHSMEVAFLAGLMASELGEDAKL
HHCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
AKRAGLLHDIGKAIDHEVEGSHVEIGVELATKYKEHPVVINSIASHHGDEEPTSIIAVLV
HHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHH
AAADALSAARPGARSETLENYIRRLEKLEEISESYEGVEKSFAIQAGREVRIMVKPDSIN
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC
DLEAHRLARDIRKRIEDELDYPGHIKVTVIRETRAVEYAK
HHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHCCCC
>Mature Secondary Structure 
TPIMMVLISILLILLGLVVGYFVRKTIAEAKIAGARGAAEQILEDAKRDAEALKKEALL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
EAKDEIHKLRIDAEQEVRERRNELQKQENRLLQKEENLDRKHEGIDKREAMLEKKDHSLN
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHCCCHH
ERQQHIEEMESKVDEMIRMQQSELERISSLTRDEAKQIILERVENELSHDIAIMTKETEN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCHHH
RAKEEADKKAKNILSLALQRCAADHVAETTVSVVNLPNDEMKGRIIGREGRNIRTLETLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHCCCEECCCCCCCCHHHHHC
GIDLIIDDTPEAVILSGFDPIRRETARIALDKLVQDGRIHPARIEEMVEKSRREVDDYIR
CCEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
EMGEQTTFEVGVHGLHPDLIKILGRLKFRTSYGQNVLKHSMEVAFLAGLMASELGEDAKL
HHCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
AKRAGLLHDIGKAIDHEVEGSHVEIGVELATKYKEHPVVINSIASHHGDEEPTSIIAVLV
HHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHH
AAADALSAARPGARSETLENYIRRLEKLEEISESYEGVEKSFAIQAGREVRIMVKPDSIN
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC
DLEAHRLARDIRKRIEDELDYPGHIKVTVIRETRAVEYAK
HHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA