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The map label for this gene is ymdB

Identifier: 255767390

GI number: 255767390

Start: 1768941

End: 1769735

Strand: Direct

Name: ymdB

Synonym: BSU16970

Alternate gene names: 255767390

Gene position: 1768941-1769735 (Clockwise)

Preceding gene: 16078759

Following gene: 16078761

Centisome position: 41.96

GC content: 44.03

Gene sequence:

>795_bases
ATGAGAATTTTATTTATCGGAGATGTTGTCGGTTCACCGGGCCGTGACATGGTCAAAGAATATGTACCAAAGCTAAAAAC
AAAATATAAGCCTCACTTTACCATTATTAATGGTGAAAACGCCGCACATGGAAAAGGCCTGACGGAAAAAATTTATCACA
GCTTAATCCAGTCCGGCGCAGATGCAATCACAATGGGGAACCACACATGGGACAAAAAAGAAATATTTGATTTTATAGAT
GACGTTCCGAACTTGGTTCGCCCGGCAAACTTTCCTGAAGGAACACCGGGGAAAGGGATCACATATGTGAAAGCAAACGG
CAAAGAACTAGCAGTCATTAATTTGCAGGGACGTACGTTTTTGCCGCCGCTTGATGACCCGTTTTTAAAAGCGGATGAAT
TGATCGCAGAAGCTGCGAAAAGAACACCGTACATTTTTATTGACTTTCATGCCGAAGCGACAAGTGAAAAGCTCGCACTT
GGCTGGTACACGGATGGACGGGCATCGGCTGTAGTAGGAACTCATACACACGTGCAAACAGCGGATAACCGCATTTTGCC
GAAGGGAACGGCATATATTACTGATGTGGGAATGACTGGCCCGTATGACGGTATACTGGGGATGGACAGAGAGACGATTA
TTAAGCGATTCAAAACGAACCTTCCAGTCCGGTTTACTGTCGCTGAAGGAAAAACAACGCTCAGCGGAGTTGTCATTGAC
ATTGACGATCAAACGAAAAAAGCCGTGAAAATTGAGCGTATTTTAATCAACGATGATCACATGTTCTTTGAATAG

Upstream 100 bases:

>100_bases
GAGAGACTCGAGCCGTAGAGTATGCAAAATAAAGTGATGCGCTAAGCATCACTTTATTTTTTTGACGGCAAGGAATTTTC
AAGAAGAAAGGATTTACAAA

Downstream 100 bases:

>100_bases
TTGAACATATGGTTATTTTATAAAAATATTAAAAAGAAAAGCAGGAATATAGCAACTCCTTAGTGAATATAGTAAAAATG
GAAGGTAGCCCGCTATTTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MRILFIGDVVGSPGRDMVKEYVPKLKTKYKPHFTIINGENAAHGKGLTEKIYHSLIQSGADAITMGNHTWDKKEIFDFID
DVPNLVRPANFPEGTPGKGITYVKANGKELAVINLQGRTFLPPLDDPFLKADELIAEAAKRTPYIFIDFHAEATSEKLAL
GWYTDGRASAVVGTHTHVQTADNRILPKGTAYITDVGMTGPYDGILGMDRETIIKRFKTNLPVRFTVAEGKTTLSGVVID
IDDQTKKAVKIERILINDDHMFFE

Sequences:

>Translated_264_residues
MRILFIGDVVGSPGRDMVKEYVPKLKTKYKPHFTIINGENAAHGKGLTEKIYHSLIQSGADAITMGNHTWDKKEIFDFID
DVPNLVRPANFPEGTPGKGITYVKANGKELAVINLQGRTFLPPLDDPFLKADELIAEAAKRTPYIFIDFHAEATSEKLAL
GWYTDGRASAVVGTHTHVQTADNRILPKGTAYITDVGMTGPYDGILGMDRETIIKRFKTNLPVRFTVAEGKTTLSGVVID
IDDQTKKAVKIERILINDDHMFFE
>Mature_264_residues
MRILFIGDVVGSPGRDMVKEYVPKLKTKYKPHFTIINGENAAHGKGLTEKIYHSLIQSGADAITMGNHTWDKKEIFDFID
DVPNLVRPANFPEGTPGKGITYVKANGKELAVINLQGRTFLPPLDDPFLKADELIAEAAKRTPYIFIDFHAEATSEKLAL
GWYTDGRASAVVGTHTHVQTADNRILPKGTAYITDVGMTGPYDGILGMDRETIIKRFKTNLPVRFTVAEGKTTLSGVVID
IDDQTKKAVKIERILINDDHMFFE

Specific function: Unknown

COG id: COG1692

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YMDB_BACSU (O31775)

Other databases:

- EMBL:   AL009126
- PIR:   G69884
- RefSeq:   NP_389579.2
- HSSP:   Q5SKL8
- ProteinModelPortal:   O31775
- SMR:   O31775
- EnsemblBacteria:   EBBACT00000000079
- GeneID:   939441
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU16970
- NMPDR:   fig|224308.1.peg.1700
- GenoList:   BSU16970
- GeneTree:   EBGT00050000002681
- HOGENOM:   HBG352912
- ProtClustDB:   CLSK2391274
- BioCyc:   BSUB:BSU16970-MONOMER
- InterPro:   IPR005235
- TIGRFAMs:   TIGR00282

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29289; Mature: 29289

Theoretical pI: Translated: 6.98; Mature: 6.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRILFIGDVVGSPGRDMVKEYVPKLKTKYKPHFTIINGENAAHGKGLTEKIYHSLIQSGA
CEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCC
DAITMGNHTWDKKEIFDFIDDVPNLVRPANFPEGTPGKGITYVKANGKELAVINLQGRTF
CEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCEEEEEEECCCEE
LPPLDDPFLKADELIAEAAKRTPYIFIDFHAEATSEKLALGWYTDGRASAVVGTHTHVQT
CCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEEEECCCCCEEEEECCCEEEC
ADNRILPKGTAYITDVGMTGPYDGILGMDRETIIKRFKTNLPVRFTVAEGKTTLSGVVID
CCCEECCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCEEEEEEEEE
IDDQTKKAVKIERILINDDHMFFE
ECCCCCHHEEEEEEEECCCCEEEC
>Mature Secondary Structure
MRILFIGDVVGSPGRDMVKEYVPKLKTKYKPHFTIINGENAAHGKGLTEKIYHSLIQSGA
CEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCC
DAITMGNHTWDKKEIFDFIDDVPNLVRPANFPEGTPGKGITYVKANGKELAVINLQGRTF
CEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCEEEEEEECCCEE
LPPLDDPFLKADELIAEAAKRTPYIFIDFHAEATSEKLALGWYTDGRASAVVGTHTHVQT
CCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEEEECCCCCEEEEECCCEEEC
ADNRILPKGTAYITDVGMTGPYDGILGMDRETIIKRFKTNLPVRFTVAEGKTTLSGVVID
CCCEECCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCEEEEEEEEE
IDDQTKKAVKIERILINDDHMFFE
ECCCCCHHEEEEEEEECCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377