Click here to switch to the map view.

The map label for this gene is ykoX

Identifier: 16078407

GI number: 16078407

Start: 1409912

End: 1410577

Strand: Direct

Name: ykoX

Synonym: BSU13430

Alternate gene names: 16078407

Gene position: 1409912-1410577 (Clockwise)

Preceding gene: 16078404

Following gene: 16078408

Centisome position: 33.45

GC content: 43.09

Gene sequence:

>666_bases
ATGATACATAAACATGAAACAAGGGAGTTGGTGGCTATCGAAGAGCTGGTTATGTCATGGATTGAAGCATTTAAAAGCTT
ATCTTATTTTGGAATATTTCTAGCGCTCAGCATTGAGTTTATTCCGGCCGAAGTCGTCTTGCCGCTTGCGGGCTATTGGG
TATCTAAAGGCGATATGACACTTGCTGGCGTTGTTTTGGCAGGATCGCTTGGAGGAGTGGCCGGTCCGCTTACGCTGTAT
TGGATAGGCCGGTACGGAGGAAGGCCGTTTCTTGAACGTTTTGGGAAGTATCTCTTTATTAAACCTGAAGCGCTTGATAA
GTCAGATAATTTTTTCAAAAAACATGGGGGCTTTGTCGCCTTCAGCGGCCGTTTCTTGCCTGGTATCAGGACATTGATTT
CCATACCGTGCGGAATTGCAAAAATGAATGTTTGGGTGTTTTCGCTTTATACATTCATTGCTATGCTTCCGATTACATTT
GTATATGTTTATCTCGGTGTGAAGCTCGGTGAAAATTGGAAGGCAGTCGGCTCTATTCTTGATCAATATATGCTTCCGAT
CGGGATAGCGATTTTGGCGCTGTTCCTGCTCTACTTACTGATGAAAAAGAGGAAGAAACGCACGCACTCCGAACAATTAT
CTGTATTTTTGAAAAATAAACGTTGA

Upstream 100 bases:

>100_bases
TTCAAAACGATAGAAATACGAGGGAGATCTATTTTTAGTTCAACTGACCGTGAAAAATGTGTTAAAATCATCTTGATGTT
TTCCGAAAAGAGAAAAATGT

Downstream 100 bases:

>100_bases
CAAATCACTGCGCTGCGCATATTATTGACGTATAAAATCATATTTCTTGAAATCCCAAAGGGGAGTAGCGTCCGGAATGT
ATTCCGGAAACAAAGTCGTC

Product: integral inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MIHKHETRELVAIEELVMSWIEAFKSLSYFGIFLALSIEFIPAEVVLPLAGYWVSKGDMTLAGVVLAGSLGGVAGPLTLY
WIGRYGGRPFLERFGKYLFIKPEALDKSDNFFKKHGGFVAFSGRFLPGIRTLISIPCGIAKMNVWVFSLYTFIAMLPITF
VYVYLGVKLGENWKAVGSILDQYMLPIGIAILALFLLYLLMKKRKKRTHSEQLSVFLKNKR

Sequences:

>Translated_221_residues
MIHKHETRELVAIEELVMSWIEAFKSLSYFGIFLALSIEFIPAEVVLPLAGYWVSKGDMTLAGVVLAGSLGGVAGPLTLY
WIGRYGGRPFLERFGKYLFIKPEALDKSDNFFKKHGGFVAFSGRFLPGIRTLISIPCGIAKMNVWVFSLYTFIAMLPITF
VYVYLGVKLGENWKAVGSILDQYMLPIGIAILALFLLYLLMKKRKKRTHSEQLSVFLKNKR
>Mature_221_residues
MIHKHETRELVAIEELVMSWIEAFKSLSYFGIFLALSIEFIPAEVVLPLAGYWVSKGDMTLAGVVLAGSLGGVAGPLTLY
WIGRYGGRPFLERFGKYLFIKPEALDKSDNFFKKHGGFVAFSGRFLPGIRTLISIPCGIAKMNVWVFSLYTFIAMLPITF
VYVYLGVKLGENWKAVGSILDQYMLPIGIAILALFLLYLLMKKRKKRTHSEQLSVFLKNKR

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YKOX_BACSU (O34908)

Other databases:

- EMBL:   AL009126
- PIR:   B69861
- RefSeq:   NP_389226.1
- ProteinModelPortal:   O34908
- EnsemblBacteria:   EBBACT00000000220
- GeneID:   939381
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU13430
- NMPDR:   fig|224308.1.peg.1345
- GenoList:   BSU13430
- GeneTree:   EBGT00070000031919
- HOGENOM:   HBG657460
- OMA:   PLAGYWV
- ProtClustDB:   CLSK887184
- BioCyc:   BSUB:BSU13430-MONOMER
- InterPro:   IPR015414

Pfam domain/function: PF09335 SNARE_assoc

EC number: NA

Molecular weight: Translated: 24940; Mature: 24940

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xe552258)-; HASH(0xb535fdc)-; HASH(0xeaac05c)-; HASH(0xe4e93fc)-;

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIHKHETRELVAIEELVMSWIEAFKSLSYFGIFLALSIEFIPAEVVLPLAGYWVSKGDMT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHEECCCCCH
LAGVVLAGSLGGVAGPLTLYWIGRYGGRPFLERFGKYLFIKPEALDKSDNFFKKHGGFVA
HHHHHHHCCCCCCCCCHHHEEECCCCCCHHHHHCCCEEEECCHHCCCCCHHHHHCCCEEE
FSGRFLPGIRTLISIPCGIAKMNVWVFSLYTFIAMLPITFVYVYLGVKLGENWKAVGSIL
ECCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
DQYMLPIGIAILALFLLYLLMKKRKKRTHSEQLSVFLKNKR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
>Mature Secondary Structure
MIHKHETRELVAIEELVMSWIEAFKSLSYFGIFLALSIEFIPAEVVLPLAGYWVSKGDMT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHEECCCCCH
LAGVVLAGSLGGVAGPLTLYWIGRYGGRPFLERFGKYLFIKPEALDKSDNFFKKHGGFVA
HHHHHHHCCCCCCCCCHHHEEECCCCCCHHHHHCCCEEEECCHHCCCCCHHHHHCCCEEE
FSGRFLPGIRTLISIPCGIAKMNVWVFSLYTFIAMLPITFVYVYLGVKLGENWKAVGSIL
ECCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
DQYMLPIGIAILALFLLYLLMKKRKKRTHSEQLSVFLKNKR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377