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The map label for this gene is xhlB

Identifier: 16078345

GI number: 16078345

Start: 1347013

End: 1347276

Strand: Direct

Name: xhlB

Synonym: BSU12800

Alternate gene names: 16078345

Gene position: 1347013-1347276 (Clockwise)

Preceding gene: 16078344

Following gene: 16078346

Centisome position: 31.95

GC content: 43.94

Gene sequence:

>264_bases
ATGAACACGTTTGACAAGGGCACGGTCATCAGGACGGTGCTTCTTTTAATTGCTTTAATCAACCAGACCATGCTGATGCT
CGGCAAATCACCATTGGACATTCAGGAGGAGCAGGTCAATCAGCTCGCTGACGCTCTTTATTCAGCCGGTTCCATCGCAT
TTACAATTGGAACGACACTTGCCGCTTGGTTTAAAAACAACTATGTAACAGAAAAAGGGAAAAAACAGCGCGACTTGTTA
AGGGACAATAATCTGACGAAATAA

Upstream 100 bases:

>100_bases
CACCATCACAGGTGCCATCATTACAGCAGTGTCTACAGGCATCATTGGCGGAGCCATCGCCATTATGTACAGCCTGCTGC
AGCATTAAAGGGGGATTTTT

Downstream 100 bases:

>100_bases
GGAGAGATGAAAATGGTTAACATTATTCAAGACTTTATTCCGGTTGGCGCAAATAACCGTCCAGGCTACGCAATGACGCC
GCTTTACATTACGGTGCACA

Product: bacteriophage PBSX holin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 87; Mature: 87

Protein sequence:

>87_residues
MNTFDKGTVIRTVLLLIALINQTMLMLGKSPLDIQEEQVNQLADALYSAGSIAFTIGTTLAAWFKNNYVTEKGKKQRDLL
RDNNLTK

Sequences:

>Translated_87_residues
MNTFDKGTVIRTVLLLIALINQTMLMLGKSPLDIQEEQVNQLADALYSAGSIAFTIGTTLAAWFKNNYVTEKGKKQRDLL
RDNNLTK
>Mature_87_residues
MNTFDKGTVIRTVLLLIALINQTMLMLGKSPLDIQEEQVNQLADALYSAGSIAFTIGTTLAAWFKNNYVTEKGKKQRDLL
RDNNLTK

Specific function: Involved in cell lysis upon induction of pbsX

COG id: NA

COG function: NA

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SPP1 holin family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): XHLB_BACSU (Q99163)

Other databases:

- EMBL:   Z36941
- EMBL:   M63943
- EMBL:   L25924
- EMBL:   Z70177
- EMBL:   AL009126
- PIR:   F49754
- RefSeq:   NP_389163.1
- EnsemblBacteria:   EBBACT00000002147
- GeneID:   939732
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU12800
- NMPDR:   fig|224308.1.peg.1282
- GenoList:   BSU12800
- GeneTree:   EBGT00050000001813
- HOGENOM:   HBG693286
- OMA:   FDKGTVI
- ProtClustDB:   CLSK887142
- BioCyc:   BSUB:BSU12800-MONOMER
- InterPro:   IPR006479
- ProDom:   PD008023
- TIGRFAMs:   TIGR01592

Pfam domain/function: PF04688 Phage_holin

EC number: NA

Molecular weight: Translated: 9731; Mature: 9731

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xe736e28)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTFDKGTVIRTVLLLIALINQTMLMLGKSPLDIQEEQVNQLADALYSAGSIAFTIGTTL
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHH
AAWFKNNYVTEKGKKQRDLLRDNNLTK
HHHHHCCCCCCCCHHHHHHHHCCCCCH
>Mature Secondary Structure
MNTFDKGTVIRTVLLLIALINQTMLMLGKSPLDIQEEQVNQLADALYSAGSIAFTIGTTL
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHH
AAWFKNNYVTEKGKKQRDLLRDNNLTK
HHHHHCCCCCCCCHHHHHHHHCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2033382; 7921239; 9555893; 9384377