| Definition | Bacillus subtilis subsp. subtilis str. 168 chromosome, complete genome. |
|---|---|
| Accession | NC_000964 |
| Length | 4,215,606 |
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The map label for this gene is xlyA
Identifier: 16078346
GI number: 16078346
Start: 1347289
End: 1348182
Strand: Direct
Name: xlyA
Synonym: BSU12810
Alternate gene names: 16078346
Gene position: 1347289-1348182 (Clockwise)
Preceding gene: 16078345
Following gene: 16078352
Centisome position: 31.96
GC content: 47.09
Gene sequence:
>894_bases ATGGTTAACATTATTCAAGACTTTATTCCGGTTGGCGCAAATAACCGTCCAGGCTACGCAATGACGCCGCTTTACATTAC GGTGCACAACACAGCGAATACCGCAGTAGGAGCAGATGCTGCAGCGCATGCCCGCTATTTGAAAAATCCTGATACGACGA CAAGCTGGCATTTTACAGTTGATGATACAGAAATTTATCAGCATCTGCCTTTAAATGAAAACGGCTGGCATGCGGGAGAC GGAAATGGCAGCGGCAACCGGGCTTCTATTGGAATTGAAATTTGCGAAAATGCCGATGGCGATTTTGCAAAAGCAACAGC AAATGCCCAGTGGCTCATCAAAACATTAATGGCTGAACATAATATCAGTCTCGCCAATGTCGTCCCTCATAAGTATTGGT CAGGGAAGGAATGTCCGCGAAAATTGTTAGATACGTGGGATTCGTTCAAAGCAGGAATTGGGGGAGGCGGCAGCCAAACT TACGTCGTGAAACAGGGCGACACACTTACATCTATAGCGAGAGCATTTGGTGTTACGGTTGCTCAGCTGCAAGAGTGGAA CAATATCGAAGACCCGAATCTTATTCGCGTTGGTCAAGTATTAATTGTAAGTGCTCCATCGGCTGCTGAAAAACCCGAGC TCTATCCGCTCCCTGATGGTATCATTCAATTGACAACACCTTATACATCAGGAGAACACGTCTTTCAGGTGCAACGAGCA CTTGCGGCTCTGTATTTTTACCCTGATAAAGGCGCTGTTAACAACGGAATTGACGGCGTTTACGGACCGAAAACAGCTGA CGCAGTTGCCCGTTTTCAGTCTGTTAACGGTCTAACTGCTGACGGTATCTACGGGCCTGCGACGAAAGAGAAGATCGCAG CGCAATTAAGCTGA
Upstream 100 bases:
>100_bases ACTTGCCGCTTGGTTTAAAAACAACTATGTAACAGAAAAAGGGAAAAAACAGCGCGACTTGTTAAGGGACAATAATCTGA CGAAATAAGGAGAGATGAAA
Downstream 100 bases:
>100_bases TCAAAGACCATAAAAATCCCGGAGCCGCTCCGGGATTTATTTTTTCTTCTTCAACTTTTTTATAATTCCAGCACTGCGCT CCCTCACCCGAAGCGAGTAC
Product: bacteriophage PBSX N-acetylmuramoyl-L-alanine amidase
Products: NA
Alternate protein names: Autolysin; Cell wall hydrolase
Number of amino acids: Translated: 297; Mature: 297
Protein sequence:
>297_residues MVNIIQDFIPVGANNRPGYAMTPLYITVHNTANTAVGADAAAHARYLKNPDTTTSWHFTVDDTEIYQHLPLNENGWHAGD GNGSGNRASIGIEICENADGDFAKATANAQWLIKTLMAEHNISLANVVPHKYWSGKECPRKLLDTWDSFKAGIGGGGSQT YVVKQGDTLTSIARAFGVTVAQLQEWNNIEDPNLIRVGQVLIVSAPSAAEKPELYPLPDGIIQLTTPYTSGEHVFQVQRA LAALYFYPDKGAVNNGIDGVYGPKTADAVARFQSVNGLTADGIYGPATKEKIAAQLS
Sequences:
>Translated_297_residues MVNIIQDFIPVGANNRPGYAMTPLYITVHNTANTAVGADAAAHARYLKNPDTTTSWHFTVDDTEIYQHLPLNENGWHAGD GNGSGNRASIGIEICENADGDFAKATANAQWLIKTLMAEHNISLANVVPHKYWSGKECPRKLLDTWDSFKAGIGGGGSQT YVVKQGDTLTSIARAFGVTVAQLQEWNNIEDPNLIRVGQVLIVSAPSAAEKPELYPLPDGIIQLTTPYTSGEHVFQVQRA LAALYFYPDKGAVNNGIDGVYGPKTADAVARFQSVNGLTADGIYGPATKEKIAAQLS >Mature_297_residues MVNIIQDFIPVGANNRPGYAMTPLYITVHNTANTAVGADAAAHARYLKNPDTTTSWHFTVDDTEIYQHLPLNENGWHAGD GNGSGNRASIGIEICENADGDFAKATANAQWLIKTLMAEHNISLANVVPHKYWSGKECPRKLLDTWDSFKAGIGGGGSQT YVVKQGDTLTSIARAFGVTVAQLQEWNNIEDPNLIRVGQVLIVSAPSAAEKPELYPLPDGIIQLTTPYTSGEHVFQVQRA LAALYFYPDKGAVNNGIDGVYGPKTADAVARFQSVNGLTADGIYGPATKEKIAAQLS
Specific function: Autolysins are involved in some important biological processes such as cell separation, cell-wall turnover, competence for genetic transformation, formation of the flagella and sporulation
COG id: COG5632
COG function: function code M; N-acetylmuramoyl-L-alanine amidase
Gene ontology:
Cell location: Secreted (Potential)
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 LysM repeat
Homologues:
None
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): XLYA_BACSU (P39800)
Other databases:
- EMBL: Z36941 - EMBL: L25924 - EMBL: Z70177 - EMBL: AL009126 - EMBL: AJ002571 - PIR: I39938 - RefSeq: NP_389164.1 - PDB: 3HMA - PDB: 3HMB - PDBsum: 3HMA - PDBsum: 3HMB - ProteinModelPortal: P39800 - EnsemblBacteria: EBBACT00000003484 - GeneID: 939869 - GenomeReviews: AL009126_GR - KEGG: bsu:BSU12810 - NMPDR: fig|224308.1.peg.1283 - GenoList: BSU12810 - GeneTree: EBGT00050000000162 - HOGENOM: HBG712727 - OMA: WHAGDGN - ProtClustDB: CLSK887143 - BioCyc: BSUB:BSU12810-MONOMER - BRENDA: 3.5.1.28 - InterPro: IPR002502 - InterPro: IPR002477 - InterPro: IPR018392 - InterPro: IPR002482 - Gene3D: G3DSA:3.40.80.10 - Gene3D: G3DSA:1.10.101.10 - SMART: SM00644 - SMART: SM00257
Pfam domain/function: PF01510 Amidase_2; PF01476 LysM; PF01471 PG_binding_1; SSF55846 Amidase_2; SSF47090 PGBD_like
EC number: =3.5.1.28
Molecular weight: Translated: 31913; Mature: 31913
Theoretical pI: Translated: 5.54; Mature: 5.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVNIIQDFIPVGANNRPGYAMTPLYITVHNTANTAVGADAAAHARYLKNPDTTTSWHFTV CCCCHHHHHCCCCCCCCCEEECEEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCEEEEEE DDTEIYQHLPLNENGWHAGDGNGSGNRASIGIEICENADGDFAKATANAQWLIKTLMAEH CHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCHHHHCCCHHHHHHHHHHHC NISLANVVPHKYWSGKECPRKLLDTWDSFKAGIGGGGSQTYVVKQGDTLTSIARAFGVTV CCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCHH AQLQEWNNIEDPNLIRVGQVLIVSAPSAAEKPELYPLPDGIIQLTTPYTSGEHVFQVQRA HHHHHCCCCCCCCEEEECEEEEEECCCCCCCCCCEECCCCEEEEECCCCCCHHHHHHHHH LAALYFYPDKGAVNNGIDGVYGPKTADAVARFQSVNGLTADGIYGPATKEKIAAQLS HHHEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCC >Mature Secondary Structure MVNIIQDFIPVGANNRPGYAMTPLYITVHNTANTAVGADAAAHARYLKNPDTTTSWHFTV CCCCHHHHHCCCCCCCCCEEECEEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCEEEEEE DDTEIYQHLPLNENGWHAGDGNGSGNRASIGIEICENADGDFAKATANAQWLIKTLMAEH CHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCHHHHCCCHHHHHHHHHHHC NISLANVVPHKYWSGKECPRKLLDTWDSFKAGIGGGGSQTYVVKQGDTLTSIARAFGVTV CCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCHH AQLQEWNNIEDPNLIRVGQVLIVSAPSAAEKPELYPLPDGIIQLTTPYTSGEHVFQVQRA HHHHHCCCCCCCCEEEECEEEEEECCCCCCCCCCEECCCCEEEEECCCCCCHHHHHHHHH LAALYFYPDKGAVNNGIDGVYGPKTADAVARFQSVNGLTADGIYGPATKEKIAAQLS HHHEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7921239; 9555893; 9384377