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The map label for this gene is xtmB

Identifier: 16078323

GI number: 16078323

Start: 1325890

End: 1327191

Strand: Direct

Name: xtmB

Synonym: BSU12580

Alternate gene names: 16078323

Gene position: 1325890-1327191 (Clockwise)

Preceding gene: 16078322

Following gene: 255767286

Centisome position: 31.45

GC content: 46.31

Gene sequence:

>1302_bases
ATGATTGTAAAAGAAATCAACCCTCATTTCGAAGATTACGTGTTCAATTGGGAGCAGACGTACCAGTTTCTTGTCGGCGG
CTACGGCTCATCCAAAAGCTATCATACCGCATTGAAAATCGTGCTAAAGCTGCTGAAGGAAAAACGGACGGCCCTTGTGA
TCCGGGAGGTGTTCGATACCCATCGGGATTCGACCTTCGCCTTGTTTCAAGAGGTGATCGAAGAGCTCGGTCTCACAAAG
GCCGTGGCATCTCTTTCTTCCCCGCTGCAGCTGCGATTTCACAATGGCAGCCGGATCATGTTCAAAGGAATGGACAATCC
GGCAAAATTAAAATCGGTTCATAACATTTCATTAATATGGATTGAAGAGTGCTCAGAGGTGAAGTATGAGGGGTTCAAGG
AGTTAATCGGACGTCTTCGCCATCCTGAGCTAAAGCTTCATATGATCTGTACCACCAATCCCGTCGGCACCTCCAATTGG
ACGTATAGGCATTTTTTTCGGGATGAACGCAAGAAACGGTTTGTGCTGGATGACAGCGAACTTTACGAAAAGCGGACGAT
TGTAAAGGGAGATACGTATTACCATCATTCCACCGCTAACGACAATCTTTTTCTCCCGGAAAGCTATGTGAAACAGCTTG
ACGGACTCAAAGAGTATGATCCCGACCTGTACCGGATTGCCCGAAAAGGACGATTCGGCGTCAACGGGATCAGGGTGCTG
CCGCAGTTCGAGGTACTCCCGCATGATCAAGTGAAAAAATGTATCGCAGCCATCAGCAAACCAATCTTTCGTACAGGTAT
GGATTTTGGATTCGAGGAATCCTATAATGCCGTCGTCCGGCTTGCTGTAGATCCTGAAAAAAAATACCTCTACATTTATT
GGGAGTATTATCAAAATAAAATGACAGATGATAGGACGGCTGAGGAGCTGCGTGAGTTTATTGAGACACAGGAATTGATC
AAAGCCGACTCGGCTGAGCCGAAAAGCATTCAATATTTCCGCCAGCAGGGCTTTCGGATGGTTGGAGCCAGAAAGTTTCC
CGGCTCCAGGCTTCAATATACCAAAAAGGTAAAACGGTTCAAAAAAATCTTCTGTTCGGACCGCTGTGAAAATGTCATCT
ATGAGCTCGAGACACTTACGTATGCCAAAGATAAAAACGGAGCTCTGATTGAGGATGAATTCACGATTGACCCGCATACG
CTTTCTGCCATTTGGTATGCGCTTGATGATTATGAGGTTGCTGATATGAAAGAGACAGCACACAAACGAATGCGGCCGAA
CCGAGAAAGGAGGAGGTCATAA

Upstream 100 bases:

>100_bases
TTGAAAATGAGAAATTGAAGCTTGCCAAACAAAAAGCGGAGAAAACAGATGACAGCCAGGAGCCGATTGAAATTATGATC
AAACGAAAAGAGCGCAAGTC

Downstream 100 bases:

>100_bases
ATCATGCACAACCAAACAGTCAGAGCAACTGTATTTAAAGCCAATGCCGCGGCTCCTCAGACAAAGCAAATCTATGAAGA
TGACTTTTCTGAGCTGTACG

Product: PBSX defective prophage terminase large subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 433; Mature: 433

Protein sequence:

>433_residues
MIVKEINPHFEDYVFNWEQTYQFLVGGYGSSKSYHTALKIVLKLLKEKRTALVIREVFDTHRDSTFALFQEVIEELGLTK
AVASLSSPLQLRFHNGSRIMFKGMDNPAKLKSVHNISLIWIEECSEVKYEGFKELIGRLRHPELKLHMICTTNPVGTSNW
TYRHFFRDERKKRFVLDDSELYEKRTIVKGDTYYHHSTANDNLFLPESYVKQLDGLKEYDPDLYRIARKGRFGVNGIRVL
PQFEVLPHDQVKKCIAAISKPIFRTGMDFGFEESYNAVVRLAVDPEKKYLYIYWEYYQNKMTDDRTAEELREFIETQELI
KADSAEPKSIQYFRQQGFRMVGARKFPGSRLQYTKKVKRFKKIFCSDRCENVIYELETLTYAKDKNGALIEDEFTIDPHT
LSAIWYALDDYEVADMKETAHKRMRPNRERRRS

Sequences:

>Translated_433_residues
MIVKEINPHFEDYVFNWEQTYQFLVGGYGSSKSYHTALKIVLKLLKEKRTALVIREVFDTHRDSTFALFQEVIEELGLTK
AVASLSSPLQLRFHNGSRIMFKGMDNPAKLKSVHNISLIWIEECSEVKYEGFKELIGRLRHPELKLHMICTTNPVGTSNW
TYRHFFRDERKKRFVLDDSELYEKRTIVKGDTYYHHSTANDNLFLPESYVKQLDGLKEYDPDLYRIARKGRFGVNGIRVL
PQFEVLPHDQVKKCIAAISKPIFRTGMDFGFEESYNAVVRLAVDPEKKYLYIYWEYYQNKMTDDRTAEELREFIETQELI
KADSAEPKSIQYFRQQGFRMVGARKFPGSRLQYTKKVKRFKKIFCSDRCENVIYELETLTYAKDKNGALIEDEFTIDPHT
LSAIWYALDDYEVADMKETAHKRMRPNRERRRS
>Mature_433_residues
MIVKEINPHFEDYVFNWEQTYQFLVGGYGSSKSYHTALKIVLKLLKEKRTALVIREVFDTHRDSTFALFQEVIEELGLTK
AVASLSSPLQLRFHNGSRIMFKGMDNPAKLKSVHNISLIWIEECSEVKYEGFKELIGRLRHPELKLHMICTTNPVGTSNW
TYRHFFRDERKKRFVLDDSELYEKRTIVKGDTYYHHSTANDNLFLPESYVKQLDGLKEYDPDLYRIARKGRFGVNGIRVL
PQFEVLPHDQVKKCIAAISKPIFRTGMDFGFEESYNAVVRLAVDPEKKYLYIYWEYYQNKMTDDRTAEELREFIETQELI
KADSAEPKSIQYFRQQGFRMVGARKFPGSRLQYTKKVKRFKKIFCSDRCENVIYELETLTYAKDKNGALIEDEFTIDPHT
LSAIWYALDDYEVADMKETAHKRMRPNRERRRS

Specific function: Functions as a terminase

COG id: COG1783

COG function: function code R; Phage terminase large subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis yqaT and phage SPP1 terminase large subunit

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): XTMB_BACSU (P39786)

Other databases:

- EMBL:   Z70177
- EMBL:   AL009126
- EMBL:   Z34287
- PIR:   A69735
- RefSeq:   NP_389140.1
- ProteinModelPortal:   P39786
- SMR:   P39786
- EnsemblBacteria:   EBBACT00000001027
- GeneID:   939426
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU12580
- NMPDR:   fig|224308.1.peg.1259
- GenoList:   BSU12580
- GeneTree:   EBGT00050000005909
- HOGENOM:   HBG344663
- OMA:   PAKLKSV
- ProtClustDB:   CLSK887121
- BioCyc:   BSUB:BSU12580-MONOMER
- InterPro:   IPR006701
- InterPro:   IPR006437
- TIGRFAMs:   TIGR01547

Pfam domain/function: PF04466 Terminase_3

EC number: NA

Molecular weight: Translated: 51151; Mature: 51151

Theoretical pI: Translated: 9.02; Mature: 9.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVKEINPHFEDYVFNWEQTYQFLVGGYGSSKSYHTALKIVLKLLKEKRTALVIREVFDT
CCCCCCCCCHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
HRDSTFALFQEVIEELGLTKAVASLSSPLQLRFHNGSRIMFKGMDNPAKLKSVHNISLIW
CCCHHHHHHHHHHHHHCHHHHHHHCCCCEEEEEECCCEEEEECCCCHHHHHHHCCEEEEE
IEECSEVKYEGFKELIGRLRHPELKLHMICTTNPVGTSNWTYRHFFRDERKKRFVLDDSE
EECHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHCEEECCCHH
LYEKRTIVKGDTYYHHSTANDNLFLPESYVKQLDGLKEYDPDLYRIARKGRFGVNGIRVL
HHHHHCEEECCCEEEECCCCCCEECCHHHHHHHCCCHHCCCHHHHHHHCCCCCCCCEEEC
PQFEVLPHDQVKKCIAAISKPIFRTGMDFGFEESYNAVVRLAVDPEKKYLYIYWEYYQNK
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCC
MTDDRTAEELREFIETQELIKADSAEPKSIQYFRQQGFRMVGARKFPGSRLQYTKKVKRF
CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHH
KKIFCSDRCENVIYELETLTYAKDKNGALIEDEFTIDPHTLSAIWYALDDYEVADMKETA
HHHHHHHHHHHHHHHHHHHEEEECCCCCEECCCCEECCHHHHHHHHHHCCCCHHHHHHHH
HKRMRPNRERRRS
HHHCCCCHHHCCC
>Mature Secondary Structure
MIVKEINPHFEDYVFNWEQTYQFLVGGYGSSKSYHTALKIVLKLLKEKRTALVIREVFDT
CCCCCCCCCHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
HRDSTFALFQEVIEELGLTKAVASLSSPLQLRFHNGSRIMFKGMDNPAKLKSVHNISLIW
CCCHHHHHHHHHHHHHCHHHHHHHCCCCEEEEEECCCEEEEECCCCHHHHHHHCCEEEEE
IEECSEVKYEGFKELIGRLRHPELKLHMICTTNPVGTSNWTYRHFFRDERKKRFVLDDSE
EECHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHCEEECCCHH
LYEKRTIVKGDTYYHHSTANDNLFLPESYVKQLDGLKEYDPDLYRIARKGRFGVNGIRVL
HHHHHCEEECCCEEEECCCCCCEECCHHHHHHHCCCHHCCCHHHHHHHCCCCCCCCEEEC
PQFEVLPHDQVKKCIAAISKPIFRTGMDFGFEESYNAVVRLAVDPEKKYLYIYWEYYQNK
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCC
MTDDRTAEELREFIETQELIKADSAEPKSIQYFRQQGFRMVGARKFPGSRLQYTKKVKRF
CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHH
KKIFCSDRCENVIYELETLTYAKDKNGALIEDEFTIDPHTLSAIWYALDDYEVADMKETA
HHHHHHHHHHHHHHHHHHHEEEECCCCCEECCCCEECCHHHHHHHHHHCCCCHHHHHHHH
HKRMRPNRERRRS
HHHCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377; 8083174