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The map label for this gene is xkdE

Identifier: 255767286

GI number: 255767286

Start: 1327195

End: 1328682

Strand: Direct

Name: xkdE

Synonym: BSU12590

Alternate gene names: 255767286

Gene position: 1327195-1328682 (Clockwise)

Preceding gene: 16078323

Following gene: 255767287

Centisome position: 31.48

GC content: 46.3

Gene sequence:

>1488_bases
ATGCACAACCAAACAGTCAGAGCAACTGTATTTAAAGCCAATGCCGCGGCTCCTCAGACAAAGCAAATCTATGAAGATGA
CTTTTCTGAGCTGTACGGAGAGGACATTATTGCTCCGCCCTATAATATCATCGAGCTCAAAACCATTGCCGAATACTCGA
CCATTCTTCAGCAATGCATTGATGCGTACAGAGTGAATATTACAGGCTTTGGATTCGATGTTGAGTACACATTTGATGTC
AACGCAAGTGATGTCGATCAGGCAAAAAAGAAAAGAGCGGAAAAAGACTGGGCCAGACTCGAAGCCTTTTATAAATGTCT
TCACTTTGATGAATCAGCTGAAATGATTTTAGGCTATGCCATCGAAGACAGAGAAAAAACAGGCAACGGATTTATGGAAG
TGCTTCGCGACGGGGCGGGAAAACCTGCCGGCATCGAATATTTAGATGTGAAATATATGCGTGTATGCGGAGCAGGCGAG
CCTGTAGAGGTTTCATTTGTATATGAAGAAAACGGGAAAATGAAAAGGATCAAAAGGCAAAAACGCTTCCGAAAATATGT
GCAGATGATCAATGGAAAGAAAGTATTTTTTAAAGAATACGGCGATCCGCGAAAAATGGATATTCGCACAGGTGAATATG
TAAACACATTGGCAGAGAAGTATCAAGCAAATGAAGCCATTCACCTCAAAATCGGAAGCGGCGTATACGGTGTACCCCGC
TGGATCGGCAATATTGTCAATTTATACGGGGCCCGAAAAGCAGAAGAGCTCAATTTTATGTATTTTAAGCAGGGGCGTCA
CGTCCCCGCTGCGATTACAGTGGAAAACGGGATGCTGTCTGAAGCTTCTTACCGGGAGCTGCAGGAATACATGAATGATC
TTGAAGGCGTGGAGAACGCCCATAAATTTCTCCTGATCGAAGCGGAAGGAATCGCAAAAGAAAAGGATCTCCACGGAGGC
GAGGATATTACGCCGGTTTCCGTGGAAATCAAATCTTTGGCTGAAATTCTCCAAAACGACGCCTTGTTTCTTGAATACGA
TGAAAAAAGCAGAAATAAGCTGCGTTCCGCGTTCCGTCTCCCCCCGCTGTATACAGGCGAGGCCCAGGAATACAACCGGG
CGACAGCGGATACTGCTAGAAAAATTACGGAGGAGCAGGTTTTTCAGCCGGAGCGAAAAACTCTCGTGAATAAACTGAAC
ACGCTGCTTTTGCCGGAGCTGAATATCCATGACGTCAGGCTGACATTAAAAGGACCGGACTTTCGTGATCCGCTTGAGAT
TGCGAAGGTGCTCGGTCCTTTTATTACAGCCGGAGCAGTCTCGCCGAATGATTTACGCGACCTTGCCGGACGGGTGCTTG
GCAAAACACTTGAGGAGTGGCCGGAGGACATTTATAAACGGCCTGCAGGACAGGATGCGGAAAAGACAAACCTGGCTGCG
CTCATGCAGGAGCTGAAAGAAAGCATCGAAGATATCAAAACGTCCTGA

Upstream 100 bases:

>100_bases
TGCCATTTGGTATGCGCTTGATGATTATGAGGTTGCTGATATGAAAGAGACAGCACACAAACGAATGCGGCCGAACCGAG
AAAGGAGGAGGTCATAAATC

Downstream 100 bases:

>100_bases
AGGGAGGTGAATCAAGCAGGTGGCGCGAGAATTAAGAAATGCCAAAATCAGCTTTGTCAGTTATGTGGACAAGGCGGCTA
ACCAGACAGAATTTTTCTTT

Product: phage capsid protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 495; Mature: 495

Protein sequence:

>495_residues
MHNQTVRATVFKANAAAPQTKQIYEDDFSELYGEDIIAPPYNIIELKTIAEYSTILQQCIDAYRVNITGFGFDVEYTFDV
NASDVDQAKKKRAEKDWARLEAFYKCLHFDESAEMILGYAIEDREKTGNGFMEVLRDGAGKPAGIEYLDVKYMRVCGAGE
PVEVSFVYEENGKMKRIKRQKRFRKYVQMINGKKVFFKEYGDPRKMDIRTGEYVNTLAEKYQANEAIHLKIGSGVYGVPR
WIGNIVNLYGARKAEELNFMYFKQGRHVPAAITVENGMLSEASYRELQEYMNDLEGVENAHKFLLIEAEGIAKEKDLHGG
EDITPVSVEIKSLAEILQNDALFLEYDEKSRNKLRSAFRLPPLYTGEAQEYNRATADTARKITEEQVFQPERKTLVNKLN
TLLLPELNIHDVRLTLKGPDFRDPLEIAKVLGPFITAGAVSPNDLRDLAGRVLGKTLEEWPEDIYKRPAGQDAEKTNLAA
LMQELKESIEDIKTS

Sequences:

>Translated_495_residues
MHNQTVRATVFKANAAAPQTKQIYEDDFSELYGEDIIAPPYNIIELKTIAEYSTILQQCIDAYRVNITGFGFDVEYTFDV
NASDVDQAKKKRAEKDWARLEAFYKCLHFDESAEMILGYAIEDREKTGNGFMEVLRDGAGKPAGIEYLDVKYMRVCGAGE
PVEVSFVYEENGKMKRIKRQKRFRKYVQMINGKKVFFKEYGDPRKMDIRTGEYVNTLAEKYQANEAIHLKIGSGVYGVPR
WIGNIVNLYGARKAEELNFMYFKQGRHVPAAITVENGMLSEASYRELQEYMNDLEGVENAHKFLLIEAEGIAKEKDLHGG
EDITPVSVEIKSLAEILQNDALFLEYDEKSRNKLRSAFRLPPLYTGEAQEYNRATADTARKITEEQVFQPERKTLVNKLN
TLLLPELNIHDVRLTLKGPDFRDPLEIAKVLGPFITAGAVSPNDLRDLAGRVLGKTLEEWPEDIYKRPAGQDAEKTNLAA
LMQELKESIEDIKTS
>Mature_495_residues
MHNQTVRATVFKANAAAPQTKQIYEDDFSELYGEDIIAPPYNIIELKTIAEYSTILQQCIDAYRVNITGFGFDVEYTFDV
NASDVDQAKKKRAEKDWARLEAFYKCLHFDESAEMILGYAIEDREKTGNGFMEVLRDGAGKPAGIEYLDVKYMRVCGAGE
PVEVSFVYEENGKMKRIKRQKRFRKYVQMINGKKVFFKEYGDPRKMDIRTGEYVNTLAEKYQANEAIHLKIGSGVYGVPR
WIGNIVNLYGARKAEELNFMYFKQGRHVPAAITVENGMLSEASYRELQEYMNDLEGVENAHKFLLIEAEGIAKEKDLHGG
EDITPVSVEIKSLAEILQNDALFLEYDEKSRNKLRSAFRLPPLYTGEAQEYNRATADTARKITEEQVFQPERKTLVNKLN
TLLLPELNIHDVRLTLKGPDFRDPLEIAKVLGPFITAGAVSPNDLRDLAGRVLGKTLEEWPEDIYKRPAGQDAEKTNLAA
LMQELKESIEDIKTS

Specific function: Unknown

COG id: COG5518

COG function: function code R; Bacteriophage capsid portal protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phage portal family. PBSX subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): XKDE_BACSU (P54325)

Other databases:

- EMBL:   Z70177
- EMBL:   AL009126
- PIR:   E69731
- RefSeq:   NP_389141.2
- EnsemblBacteria:   EBBACT00000002552
- GeneID:   936471
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU12590
- NMPDR:   fig|224308.1.peg.1260
- GenoList:   BSU12590
- GeneTree:   EBGT00050000005988
- HOGENOM:   HBG345204
- ProtClustDB:   CLSK887122
- BioCyc:   BSUB:BSU12590-MONOMER
- InterPro:   IPR006944
- InterPro:   IPR016753
- InterPro:   IPR006430
- PIRSF:   PIRSF019260
- TIGRFAMs:   TIGR01540

Pfam domain/function: PF04860 Phage_portal

EC number: NA

Molecular weight: Translated: 56354; Mature: 56354

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHNQTVRATVFKANAAAPQTKQIYEDDFSELYGEDIIAPPYNIIELKTIAEYSTILQQCI
CCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHH
DAYRVNITGFGFDVEYTFDVNASDVDQAKKKRAEKDWARLEAFYKCLHFDESAEMILGYA
HHHEEEEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEEEE
IEDREKTGNGFMEVLRDGAGKPAGIEYLDVKYMRVCGAGEPVEVSFVYEENGKMKRIKRQ
ECCCCCCCHHHHHHHHCCCCCCCCCEEHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHH
KRFRKYVQMINGKKVFFKEYGDPRKMDIRTGEYVNTLAEKYQANEAIHLKIGSGVYGVPR
HHHHHHHHHHCCCEEEEECCCCCCEEECCCCHHHHHHHHHHCCCCEEEEEECCCCCHHHH
WIGNIVNLYGARKAEELNFMYFKQGRHVPAAITVENGMLSEASYRELQEYMNDLEGVENA
HHHHHHHHHCCCCHHHCCEEEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCC
HKFLLIEAEGIAKEKDLHGGEDITPVSVEIKSLAEILQNDALFLEYDEKSRNKLRSAFRL
CEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHCC
PPLYTGEAQEYNRATADTARKITEEQVFQPERKTLVNKLNTLLLPELNIHDVRLTLKGPD
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCC
FRDPLEIAKVLGPFITAGAVSPNDLRDLAGRVLGKTLEEWPEDIYKRPAGQDAEKTNLAA
CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
LMQELKESIEDIKTS
HHHHHHHHHHHHCCC
>Mature Secondary Structure
MHNQTVRATVFKANAAAPQTKQIYEDDFSELYGEDIIAPPYNIIELKTIAEYSTILQQCI
CCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHH
DAYRVNITGFGFDVEYTFDVNASDVDQAKKKRAEKDWARLEAFYKCLHFDESAEMILGYA
HHHEEEEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEEEE
IEDREKTGNGFMEVLRDGAGKPAGIEYLDVKYMRVCGAGEPVEVSFVYEENGKMKRIKRQ
ECCCCCCCHHHHHHHHCCCCCCCCCEEHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHH
KRFRKYVQMINGKKVFFKEYGDPRKMDIRTGEYVNTLAEKYQANEAIHLKIGSGVYGVPR
HHHHHHHHHHCCCEEEEECCCCCCEEECCCCHHHHHHHHHHCCCCEEEEEECCCCCHHHH
WIGNIVNLYGARKAEELNFMYFKQGRHVPAAITVENGMLSEASYRELQEYMNDLEGVENA
HHHHHHHHHCCCCHHHCCEEEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCC
HKFLLIEAEGIAKEKDLHGGEDITPVSVEIKSLAEILQNDALFLEYDEKSRNKLRSAFRL
CEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHCC
PPLYTGEAQEYNRATADTARKITEEQVFQPERKTLVNKLNTLLLPELNIHDVRLTLKGPD
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCC
FRDPLEIAKVLGPFITAGAVSPNDLRDLAGRVLGKTLEEWPEDIYKRPAGQDAEKTNLAA
CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
LMQELKESIEDIKTS
HHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377