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The map label for this gene is yjnA

Identifier: 16078305

GI number: 16078305

Start: 1312851

End: 1313615

Strand: Reverse

Name: yjnA

Synonym: BSU12400

Alternate gene names: 16078305

Gene position: 1313615-1312851 (Counterclockwise)

Preceding gene: 16078306

Following gene: 16078291

Centisome position: 31.16

GC content: 45.23

Gene sequence:

>765_bases
ATGAGTGTAAGCATCATATTGATGGGTTTGTTTGTCGGAGCCTTAGTCGGATTGACGGGAGTGGGTGGAGCGGCCTTATT
AACTCCCCTTTTAATTGTGCTTGGAATTAATCCTTCCATCGCGGTCGGTACGGATCTTGTATATAACTCGATCACAAAGC
TGTTTGGCGTTGCCTCCCATTGGCGGCAGAAAACGATTAACTTTAAATTGGTAAAATACTTAGCCATCGGCAGTATTCCG
AGTGCTTCGCTAGCCATTGGCATATTGCATTTGTTCCCCGCCTTTCACCAGCATCAGGAAGAAATTATTAAGCACGCTCT
AGGATATGTGTTAACGCTGGTTGCCATTTCAATCATCGTTCGTTTGTTTTTGGATAGAAAACTTCGCCCCAACCGCTGGC
AGCTGATGCCGCTTGAAAATAAGAGGGCGCTGACAATTCTTATTGGTGTTGTGTTTGGGTTTATCGTCGGATTAACATCA
ATCGGGTCCGGCTCATTATTTGCAATCGCCATGATTTACTTATTTAACATGAAAGCGTCACAGATTGTCGGAACCGATAT
CGCGCATGCTTTTCTTCTTGTTACGGCAGCAGGCATTTTGAACGCAAGCTTCGGAAGCGTGGATTACATGCTGGCAGCTA
ATCTGCTCCTCGGTTCAATTCCCGGCGTACTGATCGGGAGCCATCTTTCGCCTCGATTCTCCCCGCGTCCACTGCAATTT
ATTATGGCTTCCATTATTTTAGTCAGCGGTTTAAAATTGATTTAA

Upstream 100 bases:

>100_bases
AAGCAACTAACGTGCAAAAATTCAAAAAATTTAATTGATTAACGCGTCCTAATCATATATAATCTGATAAAAATAGTCGG
GTTTTCAGGAGGCCTTTATC

Downstream 100 bases:

>100_bases
TGAAGAAGGCTATCCGCTTGAAGGATAGCCTTTTCTTATTATAACGTCACACCCGATTTAAAAATGGCGAGTTCTTTGAA
ATCATTTTTTTCATGGTTCA

Product: integral inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 253

Protein sequence:

>254_residues
MSVSIILMGLFVGALVGLTGVGGAALLTPLLIVLGINPSIAVGTDLVYNSITKLFGVASHWRQKTINFKLVKYLAIGSIP
SASLAIGILHLFPAFHQHQEEIIKHALGYVLTLVAISIIVRLFLDRKLRPNRWQLMPLENKRALTILIGVVFGFIVGLTS
IGSGSLFAIAMIYLFNMKASQIVGTDIAHAFLLVTAAGILNASFGSVDYMLAANLLLGSIPGVLIGSHLSPRFSPRPLQF
IMASIILVSGLKLI

Sequences:

>Translated_254_residues
MSVSIILMGLFVGALVGLTGVGGAALLTPLLIVLGINPSIAVGTDLVYNSITKLFGVASHWRQKTINFKLVKYLAIGSIP
SASLAIGILHLFPAFHQHQEEIIKHALGYVLTLVAISIIVRLFLDRKLRPNRWQLMPLENKRALTILIGVVFGFIVGLTS
IGSGSLFAIAMIYLFNMKASQIVGTDIAHAFLLVTAAGILNASFGSVDYMLAANLLLGSIPGVLIGSHLSPRFSPRPLQF
IMASIILVSGLKLI
>Mature_253_residues
SVSIILMGLFVGALVGLTGVGGAALLTPLLIVLGINPSIAVGTDLVYNSITKLFGVASHWRQKTINFKLVKYLAIGSIPS
ASLAIGILHLFPAFHQHQEEIIKHALGYVLTLVAISIIVRLFLDRKLRPNRWQLMPLENKRALTILIGVVFGFIVGLTSI
GSGSLFAIAMIYLFNMKASQIVGTDIAHAFLLVTAAGILNASFGSVDYMLAANLLLGSIPGVLIGSHLSPRFSPRPLQFI
MASIILVSGLKLI

Specific function: Unknown

COG id: COG0730

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0721 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YJNA_BACSU (O34578)

Other databases:

- EMBL:   AF015825
- EMBL:   AL009126
- PIR:   E69853
- RefSeq:   NP_389122.1
- ProteinModelPortal:   O34578
- EnsemblBacteria:   EBBACT00000001760
- GeneID:   939412
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU12400
- NMPDR:   fig|224308.1.peg.1241
- GenoList:   BSU12400
- GeneTree:   EBGT00050000001254
- HOGENOM:   HBG726803
- OMA:   SIPGIWL
- ProtClustDB:   CLSK887109
- BioCyc:   BSUB:BSU12400-MONOMER
- InterPro:   IPR002781

Pfam domain/function: PF01925 DUF81

EC number: NA

Molecular weight: Translated: 27136; Mature: 27005

Theoretical pI: Translated: 10.83; Mature: 10.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xe65293c)-; HASH(0xe3aea50)-; HASH(0xe5fc424)-; HASH(0xe4917a8)-; HASH(0xe7898c8)-; HASH(0xe1a6e3c)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVSIILMGLFVGALVGLTGVGGAALLTPLLIVLGINPSIAVGTDLVYNSITKLFGVASH
CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
WRQKTINFKLVKYLAIGSIPSASLAIGILHLFPAFHQHQEEIIKHALGYVLTLVAISIIV
HHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLFLDRKLRPNRWQLMPLENKRALTILIGVVFGFIVGLTSIGSGSLFAIAMIYLFNMKAS
HHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHH
QIVGTDIAHAFLLVTAAGILNASFGSVDYMLAANLLLGSIPGVLIGSHLSPRFSPRPLQF
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHH
IMASIILVSGLKLI
HHHHHHHHHCCCCH
>Mature Secondary Structure 
SVSIILMGLFVGALVGLTGVGGAALLTPLLIVLGINPSIAVGTDLVYNSITKLFGVASH
CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
WRQKTINFKLVKYLAIGSIPSASLAIGILHLFPAFHQHQEEIIKHALGYVLTLVAISIIV
HHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLFLDRKLRPNRWQLMPLENKRALTILIGVVFGFIVGLTSIGSGSLFAIAMIYLFNMKAS
HHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHH
QIVGTDIAHAFLLVTAAGILNASFGSVDYMLAANLLLGSIPGVLIGSHLSPRFSPRPLQF
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHH
IMASIILVSGLKLI
HHHHHHHHHCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9579062; 9384377