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The map label for this gene is yjoA

Identifier: 16078306

GI number: 16078306

Start: 1313840

End: 1314304

Strand: Reverse

Name: yjoA

Synonym: BSU12410

Alternate gene names: 16078306

Gene position: 1314304-1313840 (Counterclockwise)

Preceding gene: 255767279

Following gene: 16078305

Centisome position: 31.18

GC content: 44.73

Gene sequence:

>465_bases
ATGTGCCAATCCAATCAAATTGTCAGCCATTTTTTATCCCATCGAAACGTGACCAATGAGCTTGCCGAAAAAATCAGCAA
AGACCATTACAGCTACAAACCGGCAGAAACATCAATGTCAGCAGAAGAGCTGGTCAAACACATTCTTACGTCTTTCCACT
TGTTCGCAAATGTCATTAAGGAAGGCAATGCCTCACCATTTCAAAACAAGCAGGAAGAAACAGAAACAGATCTCAATGTT
CTGGCAAAAACATATACAGAAAAAACGGTCGCTATCCTTGAACAGCTGACTGAAGAGCAGCTGGACAGAGAAATTGATCT
GACATCCGCTTTCGGCAGAAAAGTCACAGGCCGCGCGCTGCTTCAGCTTGCAATGGAGCATGAAATTCACCATAAAGGCA
ACCTGTTCGTGTATGTGCGGGAAATGGGCCACACTGAGCTTCCTTTCTATCAGCAGCGCATGTAG

Upstream 100 bases:

>100_bases
TAGCATTTTGTTTCATCCCACAGCATATTACTTGTGAATTCATAACCGTTGATATAGGATTTCATTGCACCATTTATTTT
TACATATGGAGGAGATCATA

Downstream 100 bases:

>100_bases
CGTAAACAAGAAAAAAGATACCTGTTAAGAGGTATCTTTTTTTTGCGCCTTTAGTACTTCTCGATTTCGTCCAGACACTC
ATTATAGGGCAAATGAATAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 154

Protein sequence:

>154_residues
MCQSNQIVSHFLSHRNVTNELAEKISKDHYSYKPAETSMSAEELVKHILTSFHLFANVIKEGNASPFQNKQEETETDLNV
LAKTYTEKTVAILEQLTEEQLDREIDLTSAFGRKVTGRALLQLAMEHEIHHKGNLFVYVREMGHTELPFYQQRM

Sequences:

>Translated_154_residues
MCQSNQIVSHFLSHRNVTNELAEKISKDHYSYKPAETSMSAEELVKHILTSFHLFANVIKEGNASPFQNKQEETETDLNV
LAKTYTEKTVAILEQLTEEQLDREIDLTSAFGRKVTGRALLQLAMEHEIHHKGNLFVYVREMGHTELPFYQQRM
>Mature_154_residues
MCQSNQIVSHFLSHRNVTNELAEKISKDHYSYKPAETSMSAEELVKHILTSFHLFANVIKEGNASPFQNKQEETETDLNV
LAKTYTEKTVAILEQLTEEQLDREIDLTSAFGRKVTGRALLQLAMEHEIHHKGNLFVYVREMGHTELPFYQQRM

Specific function: Unknown

COG id: COG2318

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dinB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YJOA_BACSU (O34334)

Other databases:

- EMBL:   AF015825
- EMBL:   AL009126
- PIR:   F69853
- RefSeq:   NP_389123.1
- PDB:   3DKA
- PDBsum:   3DKA
- ProteinModelPortal:   O34334
- SMR:   O34334
- PhosSite:   O34334
- EnsemblBacteria:   EBBACT00000001961
- GeneID:   939416
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU12410
- NMPDR:   fig|224308.1.peg.1242
- GenoList:   BSU12410
- GeneTree:   EBGT00050000001621
- HOGENOM:   HBG337925
- OMA:   HEIHHKG
- ProtClustDB:   CLSK887110
- BioCyc:   BSUB:BSU12410-MONOMER
- InterPro:   IPR007837

Pfam domain/function: PF05163 DinB

EC number: NA

Molecular weight: Translated: 17793; Mature: 17793

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCQSNQIVSHFLSHRNVTNELAEKISKDHYSYKPAETSMSAEELVKHILTSFHLFANVIK
CCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
EGNASPFQNKQEETETDLNVLAKTYTEKTVAILEQLTEEQLDREIDLTSAFGRKVTGRAL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCHHHHHHHH
LQLAMEHEIHHKGNLFVYVREMGHTELPFYQQRM
HHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHCC
>Mature Secondary Structure
MCQSNQIVSHFLSHRNVTNELAEKISKDHYSYKPAETSMSAEELVKHILTSFHLFANVIK
CCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
EGNASPFQNKQEETETDLNVLAKTYTEKTVAILEQLTEEQLDREIDLTSAFGRKVTGRAL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCHHHHHHHH
LQLAMEHEIHHKGNLFVYVREMGHTELPFYQQRM
HHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579062; 9384377