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The map label for this gene is yjiC

Identifier: 16078287

GI number: 16078287

Start: 1292557

End: 1293735

Strand: Direct

Name: yjiC

Synonym: BSU12220

Alternate gene names: 16078287

Gene position: 1292557-1293735 (Clockwise)

Preceding gene: 16078286

Following gene: 16078288

Centisome position: 30.66

GC content: 46.31

Gene sequence:

>1179_bases
ATGAAAAAGTACCATATTTCGATGATCAATATCCCGGCGTACGGACATGTCAATCCTACGCTTGCTTTAGTAGAGAAGCT
TTGTGAGAAAGGGCACCGTGTCACGTACGCGACGACTGAGGAGTTTGCGCCCGCTGTTCAGCAAGCCGGTGGAGAAGCAT
TGATCTATCATACATCCTTGAATATTGATCCTAAGCAAATCAGGGAGATGATGGAAAAGAATGACGCGCCCCTCAGCCTT
TTGAAAGAATCACTCAGCATTCTGCCGCAGCTTGAGGAGTTATATAAGGATGATCAGCCTGATCTGATCATCTATGACTT
TGTTGCGCTGGCTGGTAAATTGTTTGCTGAAAAGCTTAATGTTCCGGTCATTAAGCTCTGTTCGTCATATGCCCAAAATG
AATCCTTTCAGTTAGGAAATGAAGACATGCTGAAAAAAATAAGAGAAGCAGAGGCTGAATTTAAAGCCTACTTGGAGCAA
GAGAAGTTGCCGGCTGTTTCATTTGAACAGTTAGCTGTGCCGGAAGCATTAAATATTGTCTTTATGCCGAAGTCTTTTCA
GATTCAGCATGAGACGTTCGATGACCGTTTCTGTTTTGTCGGCCCCTCTCTCGGAGAACGGAAGGAAAAAGAAAGCCTGT
TGATTGACAAGGATGATCGCCCGCTTATGCTGATTTCTTTGGGTACGGCGTTTAACGCATGGCCGGAATTTTACAAGATG
TGCATCAAGGCATTTCGGGATTCTTCATGGCAAGTGATCATGTCGGTTGGGAAAACGATTGATCCAGAAAGCTTGGAGGA
TATTCCTGCTAACTTTACCATTCGCCAAAGTGTGCCGCAGCTTGAGGTGTTAGAGAAAGCTGATTTGTTCATCTCTCATG
GCGGGATGAACAGTACGATGGAAGCGATGAACGCAGGTGTGCCGCTTGTCGTCATTCCGCAAATGTATGAGCAGGAGCTC
ACTGCAAATCGGGTTGATGAATTAGGCCTTGGCGTTTATTTGCCGAAAGAGGAAGTGACTGTTTCCAGCCTGCAGGAAGC
GGTTCAGGCTGTATCCAGTGATCAAGAGCTGCTCAGCCGCGTCAAGAATATGCAAAAGGATGTAAAAGAAGCTGGCGGAG
CGGAGCGTGCGGCAGCTGAGATTGAAGCGTTTATGAAAAAATCCGCTGTCCCGCAGTAA

Upstream 100 bases:

>100_bases
CATATGGAGTGCGTCAGTATCACTCCGATTGAAAACAGTGTGATATACGGATTAAAGAGCTTCCGTGTGAAAATGTAATA
GATAAGGAGACTGGAGATTC

Downstream 100 bases:

>100_bases
AAACATAAAAACCGAAATCAATTTGATTTCGGTTTTCTGTTTAAATATTTTTTTTCATCCCGCATCTCCGGCATTCTCTA
AGAAATTTTCCGCCTTTTAC

Product: glycosyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 392; Mature: 392

Protein sequence:

>392_residues
MKKYHISMINIPAYGHVNPTLALVEKLCEKGHRVTYATTEEFAPAVQQAGGEALIYHTSLNIDPKQIREMMEKNDAPLSL
LKESLSILPQLEELYKDDQPDLIIYDFVALAGKLFAEKLNVPVIKLCSSYAQNESFQLGNEDMLKKIREAEAEFKAYLEQ
EKLPAVSFEQLAVPEALNIVFMPKSFQIQHETFDDRFCFVGPSLGERKEKESLLIDKDDRPLMLISLGTAFNAWPEFYKM
CIKAFRDSSWQVIMSVGKTIDPESLEDIPANFTIRQSVPQLEVLEKADLFISHGGMNSTMEAMNAGVPLVVIPQMYEQEL
TANRVDELGLGVYLPKEEVTVSSLQEAVQAVSSDQELLSRVKNMQKDVKEAGGAERAAAEIEAFMKKSAVPQ

Sequences:

>Translated_392_residues
MKKYHISMINIPAYGHVNPTLALVEKLCEKGHRVTYATTEEFAPAVQQAGGEALIYHTSLNIDPKQIREMMEKNDAPLSL
LKESLSILPQLEELYKDDQPDLIIYDFVALAGKLFAEKLNVPVIKLCSSYAQNESFQLGNEDMLKKIREAEAEFKAYLEQ
EKLPAVSFEQLAVPEALNIVFMPKSFQIQHETFDDRFCFVGPSLGERKEKESLLIDKDDRPLMLISLGTAFNAWPEFYKM
CIKAFRDSSWQVIMSVGKTIDPESLEDIPANFTIRQSVPQLEVLEKADLFISHGGMNSTMEAMNAGVPLVVIPQMYEQEL
TANRVDELGLGVYLPKEEVTVSSLQEAVQAVSSDQELLSRVKNMQKDVKEAGGAERAAAEIEAFMKKSAVPQ
>Mature_392_residues
MKKYHISMINIPAYGHVNPTLALVEKLCEKGHRVTYATTEEFAPAVQQAGGEALIYHTSLNIDPKQIREMMEKNDAPLSL
LKESLSILPQLEELYKDDQPDLIIYDFVALAGKLFAEKLNVPVIKLCSSYAQNESFQLGNEDMLKKIREAEAEFKAYLEQ
EKLPAVSFEQLAVPEALNIVFMPKSFQIQHETFDDRFCFVGPSLGERKEKESLLIDKDDRPLMLISLGTAFNAWPEFYKM
CIKAFRDSSWQVIMSVGKTIDPESLEDIPANFTIRQSVPQLEVLEKADLFISHGGMNSTMEAMNAGVPLVVIPQMYEQEL
TANRVDELGLGVYLPKEEVTVSSLQEAVQAVSSDQELLSRVKNMQKDVKEAGGAERAAAEIEAFMKKSAVPQ

Specific function: Unknown

COG id: COG1819

COG function: function code GC; Glycosyl transferases, related to UDP-glucuronosyltransferase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UDP-glycosyltransferase family

Homologues:

Organism=Caenorhabditis elegans, GI17551394, Length=166, Percent_Identity=27.710843373494, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI25152411, Length=211, Percent_Identity=27.4881516587678, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24645837, Length=177, Percent_Identity=30.5084745762712, Blast_Score=74, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YJIC_BACSU (O34539)

Other databases:

- EMBL:   AF015825
- EMBL:   AL009126
- PIR:   C69851
- RefSeq:   NP_389104.1
- ProteinModelPortal:   O34539
- SMR:   O34539
- EnsemblBacteria:   EBBACT00000002719
- GeneID:   939402
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU12220
- NMPDR:   fig|224308.1.peg.1223
- GenoList:   BSU12220
- GeneTree:   EBGT00070000032469
- HOGENOM:   HBG655147
- OMA:   PHADRVD
- ProtClustDB:   CLSK887102
- BioCyc:   BSUB:BSU12220-MONOMER
- InterPro:   IPR004276
- InterPro:   IPR002213
- InterPro:   IPR006326
- PANTHER:   PTHR11926
- TIGRFAMs:   TIGR01426

Pfam domain/function: PF03033 Glyco_transf_28; PF00201 UDPGT

EC number: NA

Molecular weight: Translated: 43988; Mature: 43988

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: PS00375 UDPGT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKYHISMINIPAYGHVNPTLALVEKLCEKGHRVTYATTEEFAPAVQQAGGEALIYHTSL
CCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEECHHHHHHHHHHCCCCEEEEEEEC
NIDPKQIREMMEKNDAPLSLLKESLSILPQLEELYKDDQPDLIIYDFVALAGKLFAEKLN
CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHC
VPVIKLCSSYAQNESFQLGNEDMLKKIREAEAEFKAYLEQEKLPAVSFEQLAVPEALNIV
CHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCEEE
FMPKSFQIQHETFDDRFCFVGPSLGERKEKESLLIDKDDRPLMLISLGTAFNAWPEFYKM
ECCCCEEEECCCCCCCEEEECCCCCCCHHHCCCEEECCCCCEEEEEECCHHHHHHHHHHH
CIKAFRDSSWQVIMSVGKTIDPESLEDIPANFTIRQSVPQLEVLEKADLFISHGGMNSTM
HHHHHCCCCHHHHHHHCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHEEECCCCCHHH
EAMNAGVPLVVIPQMYEQELTANRVDELGLGVYLPKEEVTVSSLQEAVQAVSSDQELLSR
HHHHCCCCEEECCHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHCCHHHHHHH
VKNMQKDVKEAGGAERAAAEIEAFMKKSAVPQ
HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKKYHISMINIPAYGHVNPTLALVEKLCEKGHRVTYATTEEFAPAVQQAGGEALIYHTSL
CCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEECHHHHHHHHHHCCCCEEEEEEEC
NIDPKQIREMMEKNDAPLSLLKESLSILPQLEELYKDDQPDLIIYDFVALAGKLFAEKLN
CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHC
VPVIKLCSSYAQNESFQLGNEDMLKKIREAEAEFKAYLEQEKLPAVSFEQLAVPEALNIV
CHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCEEE
FMPKSFQIQHETFDDRFCFVGPSLGERKEKESLLIDKDDRPLMLISLGTAFNAWPEFYKM
ECCCCEEEECCCCCCCEEEECCCCCCCHHHCCCEEECCCCCEEEEEECCHHHHHHHHHHH
CIKAFRDSSWQVIMSVGKTIDPESLEDIPANFTIRQSVPQLEVLEKADLFISHGGMNSTM
HHHHHCCCCHHHHHHHCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHEEECCCCCHHH
EAMNAGVPLVVIPQMYEQELTANRVDELGLGVYLPKEEVTVSSLQEAVQAVSSDQELLSR
HHHHCCCCEEECCHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHCCHHHHHHH
VKNMQKDVKEAGGAERAAAEIEAFMKKSAVPQ
HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9579062; 9384377