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The map label for this gene is yjcR

Identifier: 16078261

GI number: 16078261

Start: 1267574

End: 1268101

Strand: Direct

Name: yjcR

Synonym: BSU11960

Alternate gene names: 16078261

Gene position: 1267574-1268101 (Clockwise)

Preceding gene: 16078260

Following gene: 16078262

Centisome position: 30.07

GC content: 44.13

Gene sequence:

>528_bases
ATGGCCGAAAAGCACATTCAGGCGTATAAGGATTACGTCAAAGGCATGAAATACAAGGACCTTGCCGAGAAATACGGGGT
GTCAGTGAACACCATTAAATCGTGGAAGCAGCGGCATGGTTGGGAAAGGAAAAAGGGTGCACCCATTGAAAAAAGTGTGC
ACACAAAAAAAGGCGGGCAACCGGGCAACAAAAATGCATTAGGGAACAATGGCGGCGCACCACAGAAGAATCAAAATGCT
GTGACTCACGGCTTTTTCTCTAAATTCTTGCCAGAAGAGACGCTTGAAATCATGGAAGAGATTCAGGAGCGTTCGCCAGC
TGATATGATATGGGATCAGATACAGATTCAATATGCGGCCATTCTTCGGGCGCAAAAGATCATGTTCGTTTCTGATAAGG
AAGAAATGATCAAAGAGCTGAAAAAGAAAAGGTCCCTCATATCTGAGGTCAGCGAAATTGAAGATGGGCTTGTCATTAGT
TTTAGTACGTGGTTTCGCTACAGACTTTACAGTGAAACAAACACCTAA

Upstream 100 bases:

>100_bases
GATAGACAATTGGCGGTTAACGGCTTGAGCACGGTGGTGGTTTAGAGGGAATATCTTTTCCAAAACAACACGAATCAGAA
GGGGGCGGCGGTGAATGTAG

Downstream 100 bases:

>100_bases
CACATTTCACATTGCTTCAGATTGCCTTCAAACTTGATAATATAACTTCTAAACCTTCCTATAAAATGAAGGTTTTTTAT
TTGATTTCAATTTTTAAATC

Product: phage-related nucleic acid binding terminase small subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 174

Protein sequence:

>175_residues
MAEKHIQAYKDYVKGMKYKDLAEKYGVSVNTIKSWKQRHGWERKKGAPIEKSVHTKKGGQPGNKNALGNNGGAPQKNQNA
VTHGFFSKFLPEETLEIMEEIQERSPADMIWDQIQIQYAAILRAQKIMFVSDKEEMIKELKKKRSLISEVSEIEDGLVIS
FSTWFRYRLYSETNT

Sequences:

>Translated_175_residues
MAEKHIQAYKDYVKGMKYKDLAEKYGVSVNTIKSWKQRHGWERKKGAPIEKSVHTKKGGQPGNKNALGNNGGAPQKNQNA
VTHGFFSKFLPEETLEIMEEIQERSPADMIWDQIQIQYAAILRAQKIMFVSDKEEMIKELKKKRSLISEVSEIEDGLVIS
FSTWFRYRLYSETNT
>Mature_174_residues
AEKHIQAYKDYVKGMKYKDLAEKYGVSVNTIKSWKQRHGWERKKGAPIEKSVHTKKGGQPGNKNALGNNGGAPQKNQNAV
THGFFSKFLPEETLEIMEEIQERSPADMIWDQIQIQYAAILRAQKIMFVSDKEEMIKELKKKRSLISEVSEIEDGLVISF
STWFRYRLYSETNT

Specific function: Unknown

COG id: COG5484

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YJCR_BACSU (O31640)

Other databases:

- EMBL:   AL009126
- PIR:   B69848
- RefSeq:   NP_389078.1
- ProteinModelPortal:   O31640
- EnsemblBacteria:   EBBACT00000000815
- GeneID:   936443
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU11960
- NMPDR:   fig|224308.1.peg.1197
- GenoList:   BSU11960
- GeneTree:   EBGT00050000000980
- HOGENOM:   HBG535670
- BioCyc:   BSUB:BSU11960-MONOMER
- InterPro:   IPR018925

Pfam domain/function: PF10668 Phage_terminase

EC number: NA

Molecular weight: Translated: 20217; Mature: 20086

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEKHIQAYKDYVKGMKYKDLAEKYGVSVNTIKSWKQRHGWERKKGAPIEKSVHTKKGGQ
CCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCC
PGNKNALGNNGGAPQKNQNAVTHGFFSKFLPEETLEIMEEIQERSPADMIWDQIQIQYAA
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
ILRAQKIMFVSDKEEMIKELKKKRSLISEVSEIEDGLVISFSTWFRYRLYSETNT
HHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCC
>Mature Secondary Structure 
AEKHIQAYKDYVKGMKYKDLAEKYGVSVNTIKSWKQRHGWERKKGAPIEKSVHTKKGGQ
CHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCC
PGNKNALGNNGGAPQKNQNAVTHGFFSKFLPEETLEIMEEIQERSPADMIWDQIQIQYAA
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
ILRAQKIMFVSDKEEMIKELKKKRSLISEVSEIEDGLVISFSTWFRYRLYSETNT
HHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377