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The map label for this gene is yjcS

Identifier: 16078262

GI number: 16078262

Start: 1268275

End: 1268592

Strand: Direct

Name: yjcS

Synonym: BSU11970

Alternate gene names: 16078262

Gene position: 1268275-1268592 (Clockwise)

Preceding gene: 16078261

Following gene: 16078263

Centisome position: 30.09

GC content: 34.59

Gene sequence:

>318_bases
ATGAAAAGCCATAAAATGATGGGAGGGGGAATTTCGATGCATTACATAACGGCATGTTTAAAAATCATCAGTGATAAAGA
CCTTAATGAGATAATGAAGGAATTCAAAAAACTTGAGGAAGAAACGAACAAAGAAGAGGGTTGTATTACATTCCATGCTT
ATCCGCTTGAGCCATCAGAACGTAAAATAATGCTTTGGGAGATTTGGGAAAACGAAGAAGCTGTGAAAATCCATTTCACA
AAAAAACACACAATAGACGTTCAAAAACAAGAATTAACGGAAGTAGAATGGTTAATGAAAAGCAATGTGAATGATTGA

Upstream 100 bases:

>100_bases
TTTTTATTTGATTTCAATTTTTAAATCCTTTACATACAGCGATTGATTAACTCGAGCAATCAATGTCGCAGTTATATTTA
TTTTTCAAGAAAATGTTATA

Downstream 100 bases:

>100_bases
AAGGCTCTTTAAAAAGAGACATTCAATGACTTAGTATCAGCCACTTGTGACTAAGTAGTAAATTGTTGTCCAACTCTTAT
TTTTTCTATTTAATATTTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 105; Mature: 105

Protein sequence:

>105_residues
MKSHKMMGGGISMHYITACLKIISDKDLNEIMKEFKKLEEETNKEEGCITFHAYPLEPSERKIMLWEIWENEEAVKIHFT
KKHTIDVQKQELTEVEWLMKSNVND

Sequences:

>Translated_105_residues
MKSHKMMGGGISMHYITACLKIISDKDLNEIMKEFKKLEEETNKEEGCITFHAYPLEPSERKIMLWEIWENEEAVKIHFT
KKHTIDVQKQELTEVEWLMKSNVND
>Mature_105_residues
MKSHKMMGGGISMHYITACLKIISDKDLNEIMKEFKKLEEETNKEEGCITFHAYPLEPSERKIMLWEIWENEEAVKIHFT
KKHTIDVQKQELTEVEWLMKSNVND

Specific function: Unknown

COG id: COG1359

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YJCS_BACSU (O31641)

Other databases:

- EMBL:   AL009126
- PIR:   C69848
- RefSeq:   NP_389079.1
- PDB:   1Q8B
- PDBsum:   1Q8B
- ProteinModelPortal:   O31641
- SMR:   O31641
- EnsemblBacteria:   EBBACT00000002138
- GeneID:   939400
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU11970
- NMPDR:   fig|224308.1.peg.1198
- GenoList:   BSU11970
- GeneTree:   EBGT00050000002049
- HOGENOM:   HBG337914
- OMA:   EFFESSE
- ProtClustDB:   CLSK887086
- BioCyc:   BSUB:BSU11970-MONOMER
- GO:   GO:0005737
- InterPro:   IPR007138
- InterPro:   IPR011008

Pfam domain/function: PF03992 ABM; SSF54909 Dimer_A_B_barrel

EC number: NA

Molecular weight: Translated: 12457; Mature: 12457

Theoretical pI: Translated: 5.61; Mature: 5.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
6.7 %Met     (Translated Protein)
8.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
6.7 %Met     (Mature Protein)
8.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSHKMMGGGISMHYITACLKIISDKDLNEIMKEFKKLEEETNKEEGCITFHAYPLEPSE
CCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC
RKIMLWEIWENEEAVKIHFTKKHTIDVQKQELTEVEWLMKSNVND
CEEEEEEEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKSHKMMGGGISMHYITACLKIISDKDLNEIMKEFKKLEEETNKEEGCITFHAYPLEPSE
CCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC
RKIMLWEIWENEEAVKIHFTKKHTIDVQKQELTEVEWLMKSNVND
CEEEEEEEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377