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The map label for this gene is yjbM

Identifier: 16078225

GI number: 16078225

Start: 1237006

End: 1237641

Strand: Direct

Name: yjbM

Synonym: BSU11600

Alternate gene names: 16078225

Gene position: 1237006-1237641 (Clockwise)

Preceding gene: 16078224

Following gene: 16078226

Centisome position: 29.34

GC content: 45.44

Gene sequence:

>636_bases
ATGGATGACAAACAATGGGAGCGTTTTTTAGTGCCGTACCGCCAGGCTGTCGAAGAGTTGAAAGTGAAGCTCAAGGGGAT
CCGCACACTATATGAATACGAGGACGACCATTCACCGATCGAATTTGTGACCGGACGCGTCAAGCCTGTGGCGAGCATAC
TTGAAAAAGCGAGACGGAAAAGCATACCGCTGCATGAAATTGAAACCATGCAGGACATTGCTGGCCTTAGAATCATGTGC
CAATTTGTCGATGACATCCAAATCGTAAAAGAGATGCTTTTTGCCAGAAAAGATTTCACCGTTGTGGATCAGAGGGATTA
TATTGCGGAACATAAAGAGAGCGGATACCGATCATACCATCTTGTTGTGCTGTACCCTTTGCAGACGGTATCCGGAGAAA
AGCATGTTCTCGTAGAAATACAGATCCGTACACTGGCGATGAATTTTTGGGCGACCATTGAACATTCATTGAATTATAAA
TACAGCGGAAACATTCCTGAAAAAGTAAAACTAAGGCTTCAGCGCGCTTCTGAAGCGGCTTCCCGGCTTGATGAAGAGAT
GTCGGAGATCAGGGGTGAAGTACAGGAAGCTCAAGCTGCCTTTTCAAGAAAGAAAAAAGGAAGCGAGCAACAATAG

Upstream 100 bases:

>100_bases
TTAGAAAATATAAAAGATAATGCAAACTATGGAGAAGAAATGGAAGAAAAAGTGAAACGCGTGTTTTTATAGAAACTGGT
TCGGAATTGGGGGATGTATG

Downstream 100 bases:

>100_bases
GTAAAGGGGAAGAAGAGCATGAAATTTGCCGTATCATCAAAAGGAGATCAAGTTTCTGATACGCTGAAAAGCAAAATACA
GGCGTATTTATTGGATTTTG

Product: (p)ppGpp synthetase

Products: NA

Alternate protein names: (p)ppGpp synthase yjbM; Small alarmone synthase 1; SAS 1

Number of amino acids: Translated: 211; Mature: 211

Protein sequence:

>211_residues
MDDKQWERFLVPYRQAVEELKVKLKGIRTLYEYEDDHSPIEFVTGRVKPVASILEKARRKSIPLHEIETMQDIAGLRIMC
QFVDDIQIVKEMLFARKDFTVVDQRDYIAEHKESGYRSYHLVVLYPLQTVSGEKHVLVEIQIRTLAMNFWATIEHSLNYK
YSGNIPEKVKLRLQRASEAASRLDEEMSEIRGEVQEAQAAFSRKKKGSEQQ

Sequences:

>Translated_211_residues
MDDKQWERFLVPYRQAVEELKVKLKGIRTLYEYEDDHSPIEFVTGRVKPVASILEKARRKSIPLHEIETMQDIAGLRIMC
QFVDDIQIVKEMLFARKDFTVVDQRDYIAEHKESGYRSYHLVVLYPLQTVSGEKHVLVEIQIRTLAMNFWATIEHSLNYK
YSGNIPEKVKLRLQRASEAASRLDEEMSEIRGEVQEAQAAFSRKKKGSEQQ
>Mature_211_residues
MDDKQWERFLVPYRQAVEELKVKLKGIRTLYEYEDDHSPIEFVTGRVKPVASILEKARRKSIPLHEIETMQDIAGLRIMC
QFVDDIQIVKEMLFARKDFTVVDQRDYIAEHKESGYRSYHLVVLYPLQTVSGEKHVLVEIQIRTLAMNFWATIEHSLNYK
YSGNIPEKVKLRLQRASEAASRLDEEMSEIRGEVQEAQAAFSRKKKGSEQQ

Specific function: Functions as a (p)ppGpp synthase. In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. YjbM has probably a

COG id: COG2357

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the relA/spoT family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YJBM_BACSU (O31611)

Other databases:

- EMBL:   AL009126
- PIR:   E69844
- RefSeq:   NP_389042.1
- ProteinModelPortal:   O31611
- SMR:   O31611
- EnsemblBacteria:   EBBACT00000000112
- GeneID:   939809
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU11600
- NMPDR:   fig|224308.1.peg.1161
- GenoList:   BSU11600
- GeneTree:   EBGT00050000001680
- HOGENOM:   HBG516408
- OMA:   KKESGYR
- ProtClustDB:   CLSK887070
- BioCyc:   BSUB:BSU11600-MONOMER
- InterPro:   IPR007685
- SMART:   SM00954

Pfam domain/function: PF04607 RelA_SpoT

EC number: =2.7.6.5

Molecular weight: Translated: 24705; Mature: 24705

Theoretical pI: Translated: 7.17; Mature: 7.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDKQWERFLVPYRQAVEELKVKLKGIRTLYEYEDDHSPIEFVTGRVKPVASILEKARRK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHC
SIPLHEIETMQDIAGLRIMCQFVDDIQIVKEMLFARKDFTVVDQRDYIAEHKESGYRSYH
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCCCCEEE
LVVLYPLQTVSGEKHVLVEIQIRTLAMNFWATIEHSLNYKYSGNIPEKVKLRLQRASEAA
EEEEEEEEECCCCCEEEEEEEHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHH
SRLDEEMSEIRGEVQEAQAAFSRKKKGSEQQ
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MDDKQWERFLVPYRQAVEELKVKLKGIRTLYEYEDDHSPIEFVTGRVKPVASILEKARRK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHC
SIPLHEIETMQDIAGLRIMCQFVDDIQIVKEMLFARKDFTVVDQRDYIAEHKESGYRSYH
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCCCCEEE
LVVLYPLQTVSGEKHVLVEIQIRTLAMNFWATIEHSLNYKYSGNIPEKVKLRLQRASEAA
EEEEEEEEECCCCCEEEEEEEHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHH
SRLDEEMSEIRGEVQEAQAAFSRKKKGSEQQ
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377