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The map label for this gene is yitL

Identifier: 16078167

GI number: 16078167

Start: 1181499

End: 1182395

Strand: Direct

Name: yitL

Synonym: BSU11030

Alternate gene names: 16078167

Gene position: 1181499-1182395 (Clockwise)

Preceding gene: 16078159

Following gene: 255767247

Centisome position: 28.03

GC content: 46.71

Gene sequence:

>897_bases
ATGTTAACAAAATCCGCAGAGAATAAGCGGAACAGGAAGGACGATAGCATGAGACCAGGGCAGCAATTAACCTTGAGTAT
AGATCACCAAACCGACTTCGGTTACTTTTTAACCGATGGGGAAGATACGATTCTCTTACATAACAGTGAAATGACTGAGG
ATATCGAGGACAGAGACGAAGTAGAAGTCTTTATATACGTAGACCAGCAGGAAAGGCTTGCGGCCACGATGAAAATTCCG
ATCATCAGCGCGGATGAATATGGCTGGGTTGAAGTGGTGGATAAAGTGGAAGATATGGGCGTTTTCGTTGATGTCGGTTT
ATCGAAGGACGCACTAGTCGCAACTGAGCATTTGCCGCCGTACGAAGATGTCTGGCCGCAAAAAGGGGACAAACTTTACT
GTATGCTGAAGGTGACGAACCGGGGGCGCATGTTTGCGAAACCAGCGCCGGAAGATATCATCAGCGAACTGTTTACCGAC
GCTTCAGAAGATCTGATGAATAAAGAGCTGACAGGTACGGTGTACAGGCTGATCGCATCGGGTTCATTCGTGATCACGGA
TGACGGTATCCGCTGTTTTATTCACCCGTCAGAAAGAAAAGAGGAGCCAAGACTGGGTTCAAGAGTCACAGGCCGGGTGA
TTCAAGTGAAAGAAGACGGTTCAGTCAACTTGTCGCTGCTTCCGAGAAAACAGGATGCAATGTCAGTTGATGCTGAGTGC
ATTCTAACGTATATGAGAATGAGAAACGGTGCCATGCCGTACAGTGACAAAAGCCAGCCTGACGATATCAGAGAACGTTT
TAATATGAGCAAAGCCGCCTTTAAACGCGCGCTGGGCCATTTGATGAAAAACGGAAAAGTGTATCAGGAAAATGGATGGA
CATACGAGAAAAAATAG

Upstream 100 bases:

>100_bases
ATATGAAAACCTCCATAACATTTAACTTATGTGTTGATTATAGTAGAATAAAGAGAAACTTCCAACAGAACAAAGAATCA
ATTTGTGATGATTGGAAAAA

Downstream 100 bases:

>100_bases
CATGAAAACGGCTCGCCTGCAGCAGACTGCGGAGCGAGCCGTTTTTTTATGTCTAGTTTAATTCATCAACCAGCGTTCTG
ATTGCCATTTCGCGATCCAC

Product: RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MLTKSAENKRNRKDDSMRPGQQLTLSIDHQTDFGYFLTDGEDTILLHNSEMTEDIEDRDEVEVFIYVDQQERLAATMKIP
IISADEYGWVEVVDKVEDMGVFVDVGLSKDALVATEHLPPYEDVWPQKGDKLYCMLKVTNRGRMFAKPAPEDIISELFTD
ASEDLMNKELTGTVYRLIASGSFVITDDGIRCFIHPSERKEEPRLGSRVTGRVIQVKEDGSVNLSLLPRKQDAMSVDAEC
ILTYMRMRNGAMPYSDKSQPDDIRERFNMSKAAFKRALGHLMKNGKVYQENGWTYEKK

Sequences:

>Translated_298_residues
MLTKSAENKRNRKDDSMRPGQQLTLSIDHQTDFGYFLTDGEDTILLHNSEMTEDIEDRDEVEVFIYVDQQERLAATMKIP
IISADEYGWVEVVDKVEDMGVFVDVGLSKDALVATEHLPPYEDVWPQKGDKLYCMLKVTNRGRMFAKPAPEDIISELFTD
ASEDLMNKELTGTVYRLIASGSFVITDDGIRCFIHPSERKEEPRLGSRVTGRVIQVKEDGSVNLSLLPRKQDAMSVDAEC
ILTYMRMRNGAMPYSDKSQPDDIRERFNMSKAAFKRALGHLMKNGKVYQENGWTYEKK
>Mature_298_residues
MLTKSAENKRNRKDDSMRPGQQLTLSIDHQTDFGYFLTDGEDTILLHNSEMTEDIEDRDEVEVFIYVDQQERLAATMKIP
IISADEYGWVEVVDKVEDMGVFVDVGLSKDALVATEHLPPYEDVWPQKGDKLYCMLKVTNRGRMFAKPAPEDIISELFTD
ASEDLMNKELTGTVYRLIASGSFVITDDGIRCFIHPSERKEEPRLGSRVTGRVIQVKEDGSVNLSLLPRKQDAMSVDAEC
ILTYMRMRNGAMPYSDKSQPDDIRERFNMSKAAFKRALGHLMKNGKVYQENGWTYEKK

Specific function: Unknown

COG id: COG2996

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YITL_BACSU (O06747)

Other databases:

- EMBL:   Y09476
- EMBL:   AL009126
- PIR:   E69840
- RefSeq:   NP_388984.1
- ProteinModelPortal:   O06747
- SMR:   O06747
- EnsemblBacteria:   EBBACT00000003145
- GeneID:   939792
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU11030
- GenoList:   BSU11030
- GeneTree:   EBGT00050000002801
- HOGENOM:   HBG313913
- OMA:   FKRALGH
- ProtClustDB:   CLSK887044
- BioCyc:   BSUB:BSU11030-MONOMER
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR022967
- InterPro:   IPR014464
- PIRSF:   PIRSF012524
- SMART:   SM00316

Pfam domain/function: SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 34054; Mature: 34054

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTKSAENKRNRKDDSMRPGQQLTLSIDHQTDFGYFLTDGEDTILLHNSEMTEDIEDRDE
CCCCCCCHHCCCCCCCCCCCCEEEEEEECCCCCCEEEECCCCEEEEECCCCCCCCCCCCC
VEVFIYVDQQERLAATMKIPIISADEYGWVEVVDKVEDMGVFVDVGLSKDALVATEHLPP
EEEEEEECCHHHEEEEEEEEEEECCCCCHHHHHHHHHHCCEEEEECCCCCCEEEECCCCC
YEDVWPQKGDKLYCMLKVTNRGRMFAKPAPEDIISELFTDASEDLMNKELTGTVYRLIAS
HHHHCCCCCCEEEEEEEECCCCEEEECCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHC
GSFVITDDGIRCFIHPSERKEEPRLGSRVTGRVIQVKEDGSVNLSLLPRKQDAMSVDAEC
CCEEEECCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCHHCCCHHH
ILTYMRMRNGAMPYSDKSQPDDIRERFNMSKAAFKRALGHLMKNGKVYQENGWTYEKK
HHHHHHHHCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCEEEECCCEEECCC
>Mature Secondary Structure
MLTKSAENKRNRKDDSMRPGQQLTLSIDHQTDFGYFLTDGEDTILLHNSEMTEDIEDRDE
CCCCCCCHHCCCCCCCCCCCCEEEEEEECCCCCCEEEECCCCEEEEECCCCCCCCCCCCC
VEVFIYVDQQERLAATMKIPIISADEYGWVEVVDKVEDMGVFVDVGLSKDALVATEHLPP
EEEEEEECCHHHEEEEEEEEEEECCCCCHHHHHHHHHHCCEEEEECCCCCCEEEECCCCC
YEDVWPQKGDKLYCMLKVTNRGRMFAKPAPEDIISELFTDASEDLMNKELTGTVYRLIAS
HHHHCCCCCCEEEEEEEECCCCEEEECCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHC
GSFVITDDGIRCFIHPSERKEEPRLGSRVTGRVIQVKEDGSVNLSLLPRKQDAMSVDAEC
CCEEEECCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCHHCCCHHH
ILTYMRMRNGAMPYSDKSQPDDIRERFNMSKAAFKRALGHLMKNGKVYQENGWTYEKK
HHHHHHHHCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCEEEECCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353932; 9384377