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The map label for this gene is yisR

Identifier: 16078146

GI number: 16078146

Start: 1162267

End: 1163130

Strand: Direct

Name: yisR

Synonym: BSU10830

Alternate gene names: 16078146

Gene position: 1162267-1163130 (Clockwise)

Preceding gene: 16078144

Following gene: 16078147

Centisome position: 27.57

GC content: 47.45

Gene sequence:

>864_bases
ATGCCTCGCATCCTGTTTACAGTCCCGCCTTTTCCGGTATTTATCGCAGCTGGGGAAGGGGTTTTTAAAAAAGGAGAAAC
CCATGTGAAACGTGTATTCTCCGTGTTTGATCTGATATATGTCAAACAGGGAACGTTATATATAACGGAAAATGAAACAT
CGTTTTCTGTTGAAGGCGGCGAGTACATCTTGCTTTCTCCCGGTCTTGAACACTACGGGACGAAGGGCAGTGATGAAGCA
ACCTCCTACTATTGGCTTCACTTCGATGAACATCGATATGAATTTACGGCAAAGGGAGGCAGCAACTGGTCTGAGCTTCA
GCAGGAAAAAGGGAGCTTCGAAGAGCTGGCCCGCTACGGATTGGCCTTGCCGAGAAAAGGCAAGGTGCAGCGCCCGCAGT
TTATGGCGCAGCAGTTTGAAAAGCTGATCGATTACTCCGCGGAAAACTCTGATTTGCCGCTCAGAAAGCAAATTTTATTT
GAGGAGCTGATGCTGCATCTTCAAAAAGAAGCGTTCCAAATACCGTCTGCGAAAGAGCGGGTAGCCTGGGAGGCGGCCCG
GTATTTACAGGAGCACTATAAGGAAAAGACGACAATCAAGGATCTGTCGCTCGCCCTTCACTATCATCAGGATTATGTGA
GCCGCTGCATGCAGCAGGTGCTCGGCGTAACTCCGGCACAATACACGAACCGGGTGAGAATGACGGAAGCGAAGCGTCTT
TTATCCTCTACAAATGATAAAATGGGCGTTATTGCGGAAACGGTCGGAATGGAAGATCCGACATACTTTTCAAAACTCTT
TAAGCAGATAGAAGGCATTTCACCAATTGAATACCGGAAAATTGTCAGCCGGAAAGTTCAATAA

Upstream 100 bases:

>100_bases
AAAATCAACGTTTTAAAGTGTACCTCCATTTCCTTATAATAAAAAGGGATAGAAACGATACTTCTTGTAAAAATCCGACT
TAAAAAGGAGGATGATTCAA

Downstream 100 bases:

>100_bases
CCAGACGAGGGATGAACATGAAAACAACAATTTACGATGTGGCAAAGGCGGCGGGTGTTTCGATCACAACTGTGTCCCGT
GTGATAAACAATACGGGGAG

Product: AraC/XylS family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 286

Protein sequence:

>287_residues
MPRILFTVPPFPVFIAAGEGVFKKGETHVKRVFSVFDLIYVKQGTLYITENETSFSVEGGEYILLSPGLEHYGTKGSDEA
TSYYWLHFDEHRYEFTAKGGSNWSELQQEKGSFEELARYGLALPRKGKVQRPQFMAQQFEKLIDYSAENSDLPLRKQILF
EELMLHLQKEAFQIPSAKERVAWEAARYLQEHYKEKTTIKDLSLALHYHQDYVSRCMQQVLGVTPAQYTNRVRMTEAKRL
LSSTNDKMGVIAETVGMEDPTYFSKLFKQIEGISPIEYRKIVSRKVQ

Sequences:

>Translated_287_residues
MPRILFTVPPFPVFIAAGEGVFKKGETHVKRVFSVFDLIYVKQGTLYITENETSFSVEGGEYILLSPGLEHYGTKGSDEA
TSYYWLHFDEHRYEFTAKGGSNWSELQQEKGSFEELARYGLALPRKGKVQRPQFMAQQFEKLIDYSAENSDLPLRKQILF
EELMLHLQKEAFQIPSAKERVAWEAARYLQEHYKEKTTIKDLSLALHYHQDYVSRCMQQVLGVTPAQYTNRVRMTEAKRL
LSSTNDKMGVIAETVGMEDPTYFSKLFKQIEGISPIEYRKIVSRKVQ
>Mature_286_residues
PRILFTVPPFPVFIAAGEGVFKKGETHVKRVFSVFDLIYVKQGTLYITENETSFSVEGGEYILLSPGLEHYGTKGSDEAT
SYYWLHFDEHRYEFTAKGGSNWSELQQEKGSFEELARYGLALPRKGKVQRPQFMAQQFEKLIDYSAENSDLPLRKQILFE
ELMLHLQKEAFQIPSAKERVAWEAARYLQEHYKEKTTIKDLSLALHYHQDYVSRCMQQVLGVTPAQYTNRVRMTEAKRLL
SSTNDKMGVIAETVGMEDPTYFSKLFKQIEGISPIEYRKIVSRKVQ

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI1786251, Length=259, Percent_Identity=25.0965250965251, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YISR_BACSU (P40331)

Other databases:

- EMBL:   Y09476
- EMBL:   Z93940
- EMBL:   AL009126
- EMBL:   L08822
- PIR:   A69838
- RefSeq:   NP_388963.1
- ProteinModelPortal:   P40331
- EnsemblBacteria:   EBBACT00000001942
- GeneID:   936352
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU10830
- NMPDR:   fig|224308.1.peg.1082
- GenoList:   BSU10830
- GeneTree:   EBGT00050000000043
- HOGENOM:   HBG313742
- OMA:   QIEGISP
- PhylomeDB:   P40331
- ProtClustDB:   CLSK887039
- BioCyc:   BSUB:BSU10830-MONOMER
- GO:   GO:0005622
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- Gene3D:   G3DSA:1.10.10.60
- SMART:   SM00342

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC; SSF51215 AraC_binding; SSF46689 Homeodomain_like

EC number: NA

Molecular weight: Translated: 33207; Mature: 33076

Theoretical pI: Translated: 7.79; Mature: 7.79

Prosite motif: PS00041 HTH_ARAC_FAMILY_1; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRILFTVPPFPVFIAAGEGVFKKGETHVKRVFSVFDLIYVKQGTLYITENETSFSVEGG
CCCEEEECCCCEEEEECCCCHHHCCHHHHHHHHHHHHHHHEECCEEEEEECCCEEEECCC
EYILLSPGLEHYGTKGSDEATSYYWLHFDEHRYEFTAKGGSNWSELQQEKGSFEELARYG
CEEEECCCHHHCCCCCCCCCCEEEEEEEECCEEEEEECCCCCHHHHHHHCCCHHHHHHHC
LALPRKGKVQRPQFMAQQFEKLIDYSAENSDLPLRKQILFEELMLHLQKEAFQIPSAKER
CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHH
VAWEAARYLQEHYKEKTTIKDLSLALHYHQDYVSRCMQQVLGVTPAQYTNRVRMTEAKRL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCHHHHHHHHHH
LSSTNDKMGVIAETVGMEDPTYFSKLFKQIEGISPIEYRKIVSRKVQ
HHCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCC
>Mature Secondary Structure 
PRILFTVPPFPVFIAAGEGVFKKGETHVKRVFSVFDLIYVKQGTLYITENETSFSVEGG
CCEEEECCCCEEEEECCCCHHHCCHHHHHHHHHHHHHHHEECCEEEEEECCCEEEECCC
EYILLSPGLEHYGTKGSDEATSYYWLHFDEHRYEFTAKGGSNWSELQQEKGSFEELARYG
CEEEECCCHHHCCCCCCCCCCEEEEEEEECCEEEEEECCCCCHHHHHHHCCCHHHHHHHC
LALPRKGKVQRPQFMAQQFEKLIDYSAENSDLPLRKQILFEELMLHLQKEAFQIPSAKER
CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHH
VAWEAARYLQEHYKEKTTIKDLSLALHYHQDYVSRCMQQVLGVTPAQYTNRVRMTEAKRL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCHHHHHHHHHH
LSSTNDKMGVIAETVGMEDPTYFSKLFKQIEGISPIEYRKIVSRKVQ
HHCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353932; 9384377; 8407808