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The map label for this gene is yhfW

Identifier: 16078103

GI number: 16078103

Start: 1114057

End: 1115586

Strand: Reverse

Name: yhfW

Synonym: BSU10390

Alternate gene names: 16078103

Gene position: 1115586-1114057 (Counterclockwise)

Preceding gene: 16078105

Following gene: 16078102

Centisome position: 26.46

GC content: 45.69

Gene sequence:

>1530_bases
TTGGCTAATCAACATTTTGCAAAGGAAGCACCTGAAACATACTGGAAAACATCAACTGACCTGCCTTCTTTTCCTGCGCT
TCAAGAGGACACTGAATGTGACGTCACCATTATCGGAGGCGGGATTACGGGAATCACAACGGCATATGAACTTACGAAGA
GAGGCTTCCGTGTCGTTTTGATTGAAGCAAATCAGGTTCTTAACGGAACCACTGCGCATACAACTGCTAAAGTTACCGCA
CAGCATGACATGATATACGACGAATTTATCCGCCATTTCGGATTAAACCATGCGAGGCTTTATTATGAAGCAAACCAAAA
CGCAATTGATTACATAAAAGGCATTGTGGATGAACATCAAATTGATTGTGAATGGATCGAGCAAGACGCATATCTTTATA
CGGCAAATGAAAACGCTGTTCAAAAAATCCACACCGAGCATGAGGCATACACAAAGCTCGGAATTGAAAGAGACCTTATC
AAGGATCTTCCAATTCCCTTAGGTTCTAAGCTGGCGCTTGTCATGAAGAATCAAGCTCAATTTCATCCGCTTCAATACTT
AAAAGCGCTTCTGGAGCAAATTGTTCAAAAAGGCGGCCGAATTTATGAAGAGACCGTTGCGCTTGATATCAAAAAAGGCG
AAAGGCCCGAAGTGGTAACAAAAAGCCGGCACGCCATTAAGAGCCGCTTTATCATATGCTGTTCCCACTTCCCTTTTTAT
GACGGAGGCGGATTATATGCTGCGAGAATGTACTCCGACAGATCTTATGTCCTTGCCATCAAGCCGAAGATCGAGTATCC
CGAGGGCATGTATTTGAGTATCGATCAGCCGTCAGTGGCGCTCCGCTATACGGTTGTAAACGGTGAAAAGCTGATTCTCT
TCAGCGGAGTAAGCCATAAAACAGGCCAGGGAAAAGCCATGTCTACACATTATGAAACACTGAGACAACTGGCCGAAAGC
ACCATCGGCATCGAAAGCATTCCATATTATTGGTCCACCCAAGATCTAGTGACGATCGACAAAATCCCGTTTATCGGGCC
GATGTCGGAAAATGAGGACAATATTCTAGTAGCGACCGGGTTCAAAAAATGGGGCATGACGTCCTCAGCAGTCGCAGCCA
CTTTATTGTCAGACCTTGTGGAGAAAAAAGAAAACCCATACGAAAGCATTTTCACGCCGTCCCGTTTCCATCTGAATCCC
GGGTTGCAGAAAGTGATTTCCTACAATGCAGATGTCGCCAAGCATTTGATAAAAGGAAAGCTTGAAAAGCCTGATGTCCA
ATTTGAAGACATTTCGCCAGGAGAAGGGAAAGCCGTCACCATAAACGGCAGGCGAGCGGGAGCATTTCGTGATGAGACAG
GCTGCCTCCATCTCGTTGATACGACTTGTACCCATTTAGGCTGCGAGGTCGAGTGGAACGACAGTGAGCATACGTGGGAT
TGTCCGTGCCACGGATCACGCTTTAAGCCATCTGGCGAAGTTGTAGAGGGTCCGGCCATTAAACCATTAAAACAAATAGA
TCTCGATTAA

Upstream 100 bases:

>100_bases
CTTTTCAACCTTATTATGTTATGAACAATGCCTGCTTCCTATGTATGAAAAGATAGAATATGGAAAAATTAAGAATAAAT
CTGATTGGAGGTATAACGGC

Downstream 100 bases:

>100_bases
ACCGTTCATTTTAATGAACGTTTTTTCAAATATTTTTCATCTGCAGCTTCATTCATGTTTCCCTTGGCCGATAAAAAAGA
AAAAGGCTTAAAAAGCCAAA

Product: Rieske [2Fe-2S] oxygenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 509; Mature: 508

Protein sequence:

>509_residues
MANQHFAKEAPETYWKTSTDLPSFPALQEDTECDVTIIGGGITGITTAYELTKRGFRVVLIEANQVLNGTTAHTTAKVTA
QHDMIYDEFIRHFGLNHARLYYEANQNAIDYIKGIVDEHQIDCEWIEQDAYLYTANENAVQKIHTEHEAYTKLGIERDLI
KDLPIPLGSKLALVMKNQAQFHPLQYLKALLEQIVQKGGRIYEETVALDIKKGERPEVVTKSRHAIKSRFIICCSHFPFY
DGGGLYAARMYSDRSYVLAIKPKIEYPEGMYLSIDQPSVALRYTVVNGEKLILFSGVSHKTGQGKAMSTHYETLRQLAES
TIGIESIPYYWSTQDLVTIDKIPFIGPMSENEDNILVATGFKKWGMTSSAVAATLLSDLVEKKENPYESIFTPSRFHLNP
GLQKVISYNADVAKHLIKGKLEKPDVQFEDISPGEGKAVTINGRRAGAFRDETGCLHLVDTTCTHLGCEVEWNDSEHTWD
CPCHGSRFKPSGEVVEGPAIKPLKQIDLD

Sequences:

>Translated_509_residues
MANQHFAKEAPETYWKTSTDLPSFPALQEDTECDVTIIGGGITGITTAYELTKRGFRVVLIEANQVLNGTTAHTTAKVTA
QHDMIYDEFIRHFGLNHARLYYEANQNAIDYIKGIVDEHQIDCEWIEQDAYLYTANENAVQKIHTEHEAYTKLGIERDLI
KDLPIPLGSKLALVMKNQAQFHPLQYLKALLEQIVQKGGRIYEETVALDIKKGERPEVVTKSRHAIKSRFIICCSHFPFY
DGGGLYAARMYSDRSYVLAIKPKIEYPEGMYLSIDQPSVALRYTVVNGEKLILFSGVSHKTGQGKAMSTHYETLRQLAES
TIGIESIPYYWSTQDLVTIDKIPFIGPMSENEDNILVATGFKKWGMTSSAVAATLLSDLVEKKENPYESIFTPSRFHLNP
GLQKVISYNADVAKHLIKGKLEKPDVQFEDISPGEGKAVTINGRRAGAFRDETGCLHLVDTTCTHLGCEVEWNDSEHTWD
CPCHGSRFKPSGEVVEGPAIKPLKQIDLD
>Mature_508_residues
ANQHFAKEAPETYWKTSTDLPSFPALQEDTECDVTIIGGGITGITTAYELTKRGFRVVLIEANQVLNGTTAHTTAKVTAQ
HDMIYDEFIRHFGLNHARLYYEANQNAIDYIKGIVDEHQIDCEWIEQDAYLYTANENAVQKIHTEHEAYTKLGIERDLIK
DLPIPLGSKLALVMKNQAQFHPLQYLKALLEQIVQKGGRIYEETVALDIKKGERPEVVTKSRHAIKSRFIICCSHFPFYD
GGGLYAARMYSDRSYVLAIKPKIEYPEGMYLSIDQPSVALRYTVVNGEKLILFSGVSHKTGQGKAMSTHYETLRQLAEST
IGIESIPYYWSTQDLVTIDKIPFIGPMSENEDNILVATGFKKWGMTSSAVAATLLSDLVEKKENPYESIFTPSRFHLNPG
LQKVISYNADVAKHLIKGKLEKPDVQFEDISPGEGKAVTINGRRAGAFRDETGCLHLVDTTCTHLGCEVEWNDSEHTWDC
PCHGSRFKPSGEVVEGPAIKPLKQIDLD

Specific function: Unknown

COG id: COG0665

COG function: function code E; Glycine/D-amino acid oxidases (deaminating)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Rieske domain

Homologues:

Organism=Escherichia coli, GI1787559, Length=235, Percent_Identity=22.9787234042553, Blast_Score=79, Evalue=5e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YHFW_BACSU (O07622)

Other databases:

- EMBL:   Y14084
- EMBL:   AL009126
- PIR:   D69832
- RefSeq:   NP_388920.1
- HSSP:   P08980
- ProteinModelPortal:   O07622
- EnsemblBacteria:   EBBACT00000003957
- GeneID:   936319
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU10390
- NMPDR:   fig|224308.1.peg.1039
- GenoList:   BSU10390
- GeneTree:   EBGT00050000001491
- HOGENOM:   HBG648043
- OMA:   MYLSIDQ
- ProtClustDB:   CLSK887007
- BioCyc:   BSUB:BSU10390-MONOMER
- GO:   GO:0016020
- InterPro:   IPR006076
- InterPro:   IPR017941
- InterPro:   IPR005805
- Gene3D:   G3DSA:2.102.10.10
- PRINTS:   PR00162

Pfam domain/function: PF01266 DAO; PF00355 Rieske; SSF50022 Rieske_dom

EC number: 1.-.-.- [C]

Molecular weight: Translated: 57110; Mature: 56979

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: PS51296 RIESKE; PS00200 RIESKE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANQHFAKEAPETYWKTSTDLPSFPALQEDTECDVTIIGGGITGITTAYELTKRGFRVVL
CCCCCCHHCCCHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCEEEE
IEANQVLNGTTAHTTAKVTAQHDMIYDEFIRHFGLNHARLYYEANQNAIDYIKGIVDEHQ
EECCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCC
IDCEWIEQDAYLYTANENAVQKIHTEHEAYTKLGIERDLIKDLPIPLGSKLALVMKNQAQ
CCCEEEECCCEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCEEEEECCCCC
FHPLQYLKALLEQIVQKGGRIYEETVALDIKKGERPEVVTKSRHAIKSRFIICCSHFPFY
CCHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCHHHHHHHHHHCEEEEEEECCCEE
DGGGLYAARMYSDRSYVLAIKPKIEYPEGMYLSIDQPSVALRYTVVNGEKLILFSGVSHK
CCCCEEEEEEECCCEEEEEEECCCCCCCCEEEEECCCCEEEEEEEECCCEEEEEECCCCC
TGQGKAMSTHYETLRQLAESTIGIESIPYYWSTQDLVTIDKIPFIGPMSENEDNILVATG
CCCCCEEHHHHHHHHHHHHHHCCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCEEEEEC
FKKWGMTSSAVAATLLSDLVEKKENPYESIFTPSRFHLNPGLQKVISYNADVAKHLIKGK
CHHHCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCEEECCCCHHHHHHCCHHHHHHHHHCC
LEKPDVQFEDISPGEGKAVTINGRRAGAFRDETGCLHLVDTTCTHLGCEVEWNDSEHTWD
CCCCCCEEECCCCCCCCEEEEECCCCCCCCCCCCEEEEEECHHHHCCCEEEECCCCCEEC
CPCHGSRFKPSGEVVEGPAIKPLKQIDLD
CCCCCCCCCCCCCEECCCCCCCHHHCCCC
>Mature Secondary Structure 
ANQHFAKEAPETYWKTSTDLPSFPALQEDTECDVTIIGGGITGITTAYELTKRGFRVVL
CCCCCHHCCCHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCEEEE
IEANQVLNGTTAHTTAKVTAQHDMIYDEFIRHFGLNHARLYYEANQNAIDYIKGIVDEHQ
EECCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCC
IDCEWIEQDAYLYTANENAVQKIHTEHEAYTKLGIERDLIKDLPIPLGSKLALVMKNQAQ
CCCEEEECCCEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCEEEEECCCCC
FHPLQYLKALLEQIVQKGGRIYEETVALDIKKGERPEVVTKSRHAIKSRFIICCSHFPFY
CCHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCHHHHHHHHHHCEEEEEEECCCEE
DGGGLYAARMYSDRSYVLAIKPKIEYPEGMYLSIDQPSVALRYTVVNGEKLILFSGVSHK
CCCCEEEEEEECCCEEEEEEECCCCCCCCEEEEECCCCEEEEEEEECCCEEEEEECCCCC
TGQGKAMSTHYETLRQLAESTIGIESIPYYWSTQDLVTIDKIPFIGPMSENEDNILVATG
CCCCCEEHHHHHHHHHHHHHHCCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCEEEEEC
FKKWGMTSSAVAATLLSDLVEKKENPYESIFTPSRFHLNPGLQKVISYNADVAKHLIKGK
CHHHCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCEEECCCCHHHHHHCCHHHHHHHHHCC
LEKPDVQFEDISPGEGKAVTINGRRAGAFRDETGCLHLVDTTCTHLGCEVEWNDSEHTWD
CCCCCCEEECCCCCCCCEEEEECCCCCCCCCCCCEEEEEECHHHHCCCEEEECCCCCEEC
CPCHGSRFKPSGEVVEGPAIKPLKQIDLD
CCCCCCCCCCCCCEECCCCCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377