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The map label for this gene is yhcF

Identifier: 16077971

GI number: 16077971

Start: 981237

End: 981602

Strand: Direct

Name: yhcF

Synonym: BSU09060

Alternate gene names: 16077971

Gene position: 981237-981602 (Clockwise)

Preceding gene: 16077970

Following gene: 16077972

Centisome position: 23.28

GC content: 43.44

Gene sequence:

>366_bases
ATGGACAATCAATTCCAATCCTCGAAACCGATTTATCTGCAGATCGCTGATCAGATCTTTTATAGGCTGGTCAGGAAGGA
GCTGCTCCCAGGAGACAAGCTTCCTTCAGTAAGAGAAATGGCGATTCAAACTAAAGTAAATCCCAATACAATTCAAAGAA
CTTACAGTGAGATGGAAAGGCTGGGTATTGTGGAGACAAGAAGAGGTCAAGGGACGTTTATTGCGGAAAAAGCAGAAATC
GTAGACGAGCTGAAAGACAAGCTGACACGAGAGGTGCTGGAAGGCTTTGTCAAGCAAATGAAAGAGCTGGGGCTAACGAA
AGAAGAAATGTTAGAAGGGATTAAAACATTCACAGAGGGAGGCTAA

Upstream 100 bases:

>100_bases
TCCATCTGTCTGTGCTAGGGTTTCCTATTGCTATAGTCATCACATTCTTGCTGCTCATCATGGCTTCAAAACTGCTTGAT
CGTAAAGTAGAGGTGTAAAT

Downstream 100 bases:

>100_bases
AATGGAAATCAAGCTAGAACATGTATCAAAAAAATACGGCCGCCATACGGCCGTCAATGATGTGTCAATCACCCTATCAT
CCGGACGGATTTATGGCCTG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 121; Mature: 121

Protein sequence:

>121_residues
MDNQFQSSKPIYLQIADQIFYRLVRKELLPGDKLPSVREMAIQTKVNPNTIQRTYSEMERLGIVETRRGQGTFIAEKAEI
VDELKDKLTREVLEGFVKQMKELGLTKEEMLEGIKTFTEGG

Sequences:

>Translated_121_residues
MDNQFQSSKPIYLQIADQIFYRLVRKELLPGDKLPSVREMAIQTKVNPNTIQRTYSEMERLGIVETRRGQGTFIAEKAEI
VDELKDKLTREVLEGFVKQMKELGLTKEEMLEGIKTFTEGG
>Mature_121_residues
MDNQFQSSKPIYLQIADQIFYRLVRKELLPGDKLPSVREMAIQTKVNPNTIQRTYSEMERLGIVETRRGQGTFIAEKAEI
VDELKDKLTREVLEGFVKQMKELGLTKEEMLEGIKTFTEGG

Specific function: Possible Transcriptional Regulator Of The Succinyl-CoA- Synthetase Operon. Binds Specifically To The Farr Promoter And Exhibits Weak Binding To The Citrate Synthase And Lipoamide Dehydrogenase Promoters. Binding At The Farr Promoter Is Abolished By Long-

COG id: COG1725

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YHCF_BACSU (P54590)

Other databases:

- EMBL:   X96983
- EMBL:   AL009126
- PIR:   B69822
- RefSeq:   NP_388787.1
- ProteinModelPortal:   P54590
- SMR:   P54590
- EnsemblBacteria:   EBBACT00000004006
- GeneID:   936231
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU09060
- NMPDR:   fig|224308.1.peg.906
- GenoList:   BSU09060
- GeneTree:   EBGT00050000000783
- HOGENOM:   HBG672500
- OMA:   RGQGTFI
- ProtClustDB:   CLSK886931
- BioCyc:   BSUB:BSU09060-MONOMER
- GO:   GO:0005622
- InterPro:   IPR000524
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- SMART:   SM00345

Pfam domain/function: PF00392 GntR

EC number: NA

Molecular weight: Translated: 13953; Mature: 13953

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNQFQSSKPIYLQIADQIFYRLVRKELLPGDKLPSVREMAIQTKVNPNTIQRTYSEMER
CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHH
LGIVETRRGQGTFIAEKAEIVDELKDKLTREVLEGFVKQMKELGLTKEEMLEGIKTFTEG
HCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
G
C
>Mature Secondary Structure
MDNQFQSSKPIYLQIADQIFYRLVRKELLPGDKLPSVREMAIQTKVNPNTIQRTYSEMER
CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHH
LGIVETRRGQGTFIAEKAEIVDELKDKLTREVLEGFVKQMKELGLTKEEMLEGIKTFTEG
HCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
G
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969498; 9384377