Click here to switch to the map view.

The map label for this gene is yhbJ

Identifier: 16077965

GI number: 16077965

Start: 977069

End: 977734

Strand: Direct

Name: yhbJ

Synonym: BSU09000

Alternate gene names: 16077965

Gene position: 977069-977734 (Clockwise)

Preceding gene: 16077964

Following gene: 16077966

Centisome position: 23.18

GC content: 37.69

Gene sequence:

>666_bases
ATGATAGAGGATGAAACGAAAGGAGAAAACAAAATGAACAGAGGACGTTTAATTCTGACCAACATTATCGGTTTGATTGT
TGTTCTTGCAATTATAGCTGGAGGTGCTTACTACTATTATCAAAGCACAAACTACGTAAAAACAGATGAAGCAAAAGTAG
CGGGCGATATGGCTGCTATTACTGCTCCAGCAGCAGGTAAAGTATCTGACTGGGATCTGGACGAAGGAAAAACAGTGAAA
AAAGGCGACACAGTTGCAAAAATCAAAGGTGAACAAACTGTTGACGTAAAATCCATTATGGATGGCACAATTGTGAAAAA
CGAAGTGAAAAACGGACAAACCGTACAAGCTGGTACAACAATTGCACAAACGATTGACATGGACAACCTATACATCACAG
CAAATATTAAAGAAACAGATATTGCGGATATTGAAGTAGGAAATAGTGTAGACGTAGTAGTTGACGGAGACCCTGATACT
ACATTTGACGGTACTGTAGAAGAAATTGGTTATGCGACTAACTCAACTTTTGATATGCTTCCTTCTACAAATTCAAGCGG
AAACTACACAAAAGTAACACAAAAAGTTCCTGTGAAAATTTCAATCAAAAACCCATCTGATAAGGTGCTTCCTGGAATGA
ATGCATCTGTTAAAATTTCTGAGTAA

Upstream 100 bases:

>100_bases
TGCGCAAACTAGCCGGAAGTTTAACGAAGCTTGCTGAAGGCTGTTCAGAAAAAAGCGGTAATTAAAAACTTCTCACATAT
TTTCACCAGCTTTCCGCAAA

Downstream 100 bases:

>100_bases
AACAGATCAGTCATCAAACCATGAAAGGAGGTTGTCTTAGATGGCTACAGGCAAAGAAAAAAATGCAAAAAACCCTATGT
CATTGCTGATTGTGCTAATG

Product: integral inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MIEDETKGENKMNRGRLILTNIIGLIVVLAIIAGGAYYYYQSTNYVKTDEAKVAGDMAAITAPAAGKVSDWDLDEGKTVK
KGDTVAKIKGEQTVDVKSIMDGTIVKNEVKNGQTVQAGTTIAQTIDMDNLYITANIKETDIADIEVGNSVDVVVDGDPDT
TFDGTVEEIGYATNSTFDMLPSTNSSGNYTKVTQKVPVKISIKNPSDKVLPGMNASVKISE

Sequences:

>Translated_221_residues
MIEDETKGENKMNRGRLILTNIIGLIVVLAIIAGGAYYYYQSTNYVKTDEAKVAGDMAAITAPAAGKVSDWDLDEGKTVK
KGDTVAKIKGEQTVDVKSIMDGTIVKNEVKNGQTVQAGTTIAQTIDMDNLYITANIKETDIADIEVGNSVDVVVDGDPDT
TFDGTVEEIGYATNSTFDMLPSTNSSGNYTKVTQKVPVKISIKNPSDKVLPGMNASVKISE
>Mature_221_residues
MIEDETKGENKMNRGRLILTNIIGLIVVLAIIAGGAYYYYQSTNYVKTDEAKVAGDMAAITAPAAGKVSDWDLDEGKTVK
KGDTVAKIKGEQTVDVKSIMDGTIVKNEVKNGQTVQAGTTIAQTIDMDNLYITANIKETDIADIEVGNSVDVVVDGDPDT
TFDGTVEEIGYATNSTFDMLPSTNSSGNYTKVTQKVPVKISIKNPSDKVLPGMNASVKISE

Specific function: Unknown

COG id: COG1566

COG function: function code V; Multidrug resistance efflux pump

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family

Homologues:

Organism=Escherichia coli, GI1788711, Length=110, Percent_Identity=34.5454545454545, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1789041, Length=107, Percent_Identity=33.6448598130841, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1790519, Length=120, Percent_Identity=30, Blast_Score=66, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YHBJ_BACSU (O31593)

Other databases:

- EMBL:   AL009126
- PIR:   D69821
- RefSeq:   NP_388781.1
- HSSP:   P02904
- ProteinModelPortal:   O31593
- SMR:   O31593
- EnsemblBacteria:   EBBACT00000000665
- GeneID:   936216
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU09000
- NMPDR:   fig|224308.1.peg.900
- GenoList:   BSU09000
- GeneTree:   EBGT00050000002477
- HOGENOM:   HBG624965
- OMA:   YATNSTF
- ProtClustDB:   CLSK886926
- BioCyc:   BSUB:BSU09000-MONOMER
- InterPro:   IPR000089
- InterPro:   IPR006143
- InterPro:   IPR011053

Pfam domain/function: PF00529 HlyD; SSF51230 Hybrid_motif

EC number: NA

Molecular weight: Translated: 23623; Mature: 23623

Theoretical pI: Translated: 4.33; Mature: 4.33

Prosite motif: PS50968 BIOTINYL_LIPOYL

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xd8ef6dc)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEDETKGENKMNRGRLILTNIIGLIVVLAIIAGGAYYYYQSTNYVKTDEAKVAGDMAAI
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCEEECCCCHHCCCEEEE
TAPAAGKVSDWDLDEGKTVKKGDTVAKIKGEQTVDVKSIMDGTIVKNEVKNGQTVQAGTT
ECCCCCCCCCCCCCCCCEEECCCEEEEECCCCEEEHHHHHCCCEEEHHCCCCCEEECCCE
IAQTIDMDNLYITANIKETDIADIEVGNSVDVVVDGDPDTTFDGTVEEIGYATNSTFDML
EEEEECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCHHHHCCCCCCCEEEC
PSTNSSGNYTKVTQKVPVKISIKNPSDKVLPGMNASVKISE
CCCCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCEEEECH
>Mature Secondary Structure
MIEDETKGENKMNRGRLILTNIIGLIVVLAIIAGGAYYYYQSTNYVKTDEAKVAGDMAAI
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCEEECCCCHHCCCEEEE
TAPAAGKVSDWDLDEGKTVKKGDTVAKIKGEQTVDVKSIMDGTIVKNEVKNGQTVQAGTT
ECCCCCCCCCCCCCCCCEEECCCEEEEECCCCEEEHHHHHCCCEEEHHCCCCCEEECCCE
IAQTIDMDNLYITANIKETDIADIEVGNSVDVVVDGDPDTTFDGTVEEIGYATNSTFDML
EEEEECCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCHHHHCCCCCCCEEEC
PSTNSSGNYTKVTQKVPVKISIKNPSDKVLPGMNASVKISE
CCCCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCEEEECH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377