Click here to switch to the map view.

The map label for this gene is catD

Identifier: 16077890

GI number: 16077890

Start: 897588

End: 897992

Strand: Direct

Name: catD

Synonym: BSU08230

Alternate gene names: 16077890

Gene position: 897588-897992 (Clockwise)

Preceding gene: 16077889

Following gene: 255767192

Centisome position: 21.29

GC content: 42.96

Gene sequence:

>405_bases
ATGAATAAATCATTTGAAATTGGCACATTACTTTTAAGAGTTATTACAGGTATTATCTTTTTTGTTCACGGTTTATCAAA
GTTTCAGGGAATGGAGGGCACCATCCAATTTTTCGGCAGCATAGGCCTTCCAAGCTTTATGGCGTATGTCATCGCAGCGA
TTGAACTGATTGGCGGAGTGCTTGTCTTCTTCGGATTGGCTACACGTATTGTCGGTGTACTGTTCGCTCTTACACTGATC
GGCGCCATCATCACTGTTAAGCTGAAAGCGCCATTCATGGGCAATGCAGAATTTGATTACCTTCTGCTTTTGACATCCAT
TCACCTGGCGCTTACTGGAAGTCGATTCCTGGCGCTGGACCCATTTGTGTTTAAAGGAAAAAAGAACGGAAACGTTTCAG
CATAA

Upstream 100 bases:

>100_bases
TCATTTTCGTAAAATGTAACAAAATTACTTGACGTAAACAAGTTATGTATATATACTAGCTTACATTAAGTAAGTGATAA
CATTTATCAAGGAGGATAAA

Downstream 100 bases:

>100_bases
GAAAAGAGGCATGCAGCATGACCAGCATTCATGAGGATACACACATTGGCTATGCCAAACTCACAATTCGCAGTCTGGAG
CGTTCGCTTCAGTTCTACTG

Product: catechol-2,3-dioxygenase membrane subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 134

Protein sequence:

>134_residues
MNKSFEIGTLLLRVITGIIFFVHGLSKFQGMEGTIQFFGSIGLPSFMAYVIAAIELIGGVLVFFGLATRIVGVLFALTLI
GAIITVKLKAPFMGNAEFDYLLLLTSIHLALTGSRFLALDPFVFKGKKNGNVSA

Sequences:

>Translated_134_residues
MNKSFEIGTLLLRVITGIIFFVHGLSKFQGMEGTIQFFGSIGLPSFMAYVIAAIELIGGVLVFFGLATRIVGVLFALTLI
GAIITVKLKAPFMGNAEFDYLLLLTSIHLALTGSRFLALDPFVFKGKKNGNVSA
>Mature_134_residues
MNKSFEIGTLLLRVITGIIFFVHGLSKFQGMEGTIQFFGSIGLPSFMAYVIAAIELIGGVLVFFGLATRIVGVLFALTLI
GAIITVKLKAPFMGNAEFDYLLLLTSIHLALTGSRFLALDPFVFKGKKNGNVSA

Specific function: Essential for growth and viability in the presence of catechol and probably involved in the detoxification of catechol

COG id: COG2259

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the doxX family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CATD_BACSU (P54720)

Other databases:

- EMBL:   D50543
- EMBL:   AL009126
- PIR:   G69802
- RefSeq:   NP_388704.1
- EnsemblBacteria:   EBBACT00000000673
- GeneID:   939204
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU08230
- NMPDR:   fig|224308.1.peg.823
- GenoList:   BSU08230
- GeneTree:   EBGT00050000001011
- HOGENOM:   HBG706937
- OMA:   FFGLATR
- ProtClustDB:   CLSK886888
- BioCyc:   BSUB:BSU08230-MONOMER
- InterPro:   IPR011637

Pfam domain/function: PF07681 DoxX

EC number: NA

Molecular weight: Translated: 14420; Mature: 14420

Theoretical pI: Translated: 10.32; Mature: 10.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xcbb0cb0)-; HASH(0xd661f64)-; HASH(0xdc730a8)-; HASH(0xd197ef8)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKSFEIGTLLLRVITGIIFFVHGLSKFQGMEGTIQFFGSIGLPSFMAYVIAAIELIGGV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHH
LVFFGLATRIVGVLFALTLIGAIITVKLKAPFMGNAEFDYLLLLTSIHLALTGSRFLALD
HHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEC
PFVFKGKKNGNVSA
CCEEECCCCCCCCH
>Mature Secondary Structure
MNKSFEIGTLLLRVITGIIFFVHGLSKFQGMEGTIQFFGSIGLPSFMAYVIAAIELIGGV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHH
LVFFGLATRIVGVLFALTLIGAIITVKLKAPFMGNAEFDYLLLLTSIHLALTGSRFLALD
HHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEC
PFVFKGKKNGNVSA
CCEEECCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8704981; 9384377