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The map label for this gene is yfmC

Identifier: 16077819

GI number: 16077819

Start: 825787

End: 826734

Strand: Reverse

Name: yfmC

Synonym: BSU07520

Alternate gene names: 16077819

Gene position: 826734-825787 (Counterclockwise)

Preceding gene: 16077820

Following gene: 16077818

Centisome position: 19.61

GC content: 43.67

Gene sequence:

>948_bases
ATGCGCACCTATTCTAACAAGTTGATTGCCATCATGAGTGTTTTATTGCTCGCCTGCCTCATTGTATCCGGCTGTTCATC
AAGCCAGAATAACAACGGAAGCGGCAAAAGCGAGTCTAAGGATTCCAGAGTGATCCATGACGAAGAAGGAAAAACGACAG
TAAGCGGCACACCTAAGCGGGTGGTTGTGCTTGAGCTTTCATTCTTGGATGCCGTTCACAATCTCGGCATTACGCCGGTG
GGCATCGCAGATGACAACAAAAAAGATATGATTAAAAAGCTTGTCGGCAGCTCCATTGATTACACATCTGTAGGCACACG
CAGCGAACCCAATCTTGAGGTCATCAGTTCCTTGAAGCCTGATTTAATCATCGCTGACGCTGAGCGCCATAAAAACATTT
ATAAACAGCTGAAAAAAATCGCCCCGACGATTGAATTAAAAAGCCGTGAAGCGACATATGACGAAACGATCGACAGCTTT
ACGACCATTGCTAAAGCATTAAATAAAGAAGATGAAGGAAAAGAAAAGCTTGCCGAGCACAAAAAAGTCATCAACGATCT
AAAAGCCGAACTTCCGAAAGATGAAAACCGCAACATCGTTCTCGGCGTTGCAAGAGCGGATTCCTTCCAGCTTCATACAT
CATCATCCTATGACGGAGAAATCTTTAAAATGCTAGGCTTTACACACGCTGTGAAGTCAGATAACGCCTATCAAGAGGTC
AGCCTTGAGCAATTGAGCAAAATCGATCCTGATATTTTGTTCATCTCAGCCAACGAAGGCAAAACCATTGTAGATGAGTG
GAAAACGAACCCGCTCTGGAAAAATCTCAAAGCGGTGAAAAATGGACAAGTCTATGATGCGGACCGTGACACTTGGACAA
GATTCAGAGGCATCAAGTCTAGTGAAACAAGCGCCAAAGATGTGCTTAAAAAAGTGTATAATAAATAG

Upstream 100 bases:

>100_bases
CTTTCTTTACTAAAAAAATATTGACATGATAAGCCATGCTATTATAGTGTTACATGTGATAATGATTCTCATTACTAAAT
CTGAAAAAAGGAAGAATGAC

Downstream 100 bases:

>100_bases
GACAAATGAGAAGCGAGGGGAATCCTTGCTTCTTCGTTTTTGCAACCAGACGCAGTAAGGAAGTGAGACTGTTGTATCAT
TCAGCCAAACGGCGCTCATC

Product: iron-dicitrate ABC transporter binding lipoprotein

Products: ADP; phosphate; iron dicitrate [Cytoplasm] [C]

Alternate protein names: Ferric-citrate-binding protein

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MRTYSNKLIAIMSVLLLACLIVSGCSSSQNNNGSGKSESKDSRVIHDEEGKTTVSGTPKRVVVLELSFLDAVHNLGITPV
GIADDNKKDMIKKLVGSSIDYTSVGTRSEPNLEVISSLKPDLIIADAERHKNIYKQLKKIAPTIELKSREATYDETIDSF
TTIAKALNKEDEGKEKLAEHKKVINDLKAELPKDENRNIVLGVARADSFQLHTSSSYDGEIFKMLGFTHAVKSDNAYQEV
SLEQLSKIDPDILFISANEGKTIVDEWKTNPLWKNLKAVKNGQVYDADRDTWTRFRGIKSSETSAKDVLKKVYNK

Sequences:

>Translated_315_residues
MRTYSNKLIAIMSVLLLACLIVSGCSSSQNNNGSGKSESKDSRVIHDEEGKTTVSGTPKRVVVLELSFLDAVHNLGITPV
GIADDNKKDMIKKLVGSSIDYTSVGTRSEPNLEVISSLKPDLIIADAERHKNIYKQLKKIAPTIELKSREATYDETIDSF
TTIAKALNKEDEGKEKLAEHKKVINDLKAELPKDENRNIVLGVARADSFQLHTSSSYDGEIFKMLGFTHAVKSDNAYQEV
SLEQLSKIDPDILFISANEGKTIVDEWKTNPLWKNLKAVKNGQVYDADRDTWTRFRGIKSSETSAKDVLKKVYNK
>Mature_315_residues
MRTYSNKLIAIMSVLLLACLIVSGCSSSQNNNGSGKSESKDSRVIHDEEGKTTVSGTPKRVVVLELSFLDAVHNLGITPV
GIADDNKKDMIKKLVGSSIDYTSVGTRSEPNLEVISSLKPDLIIADAERHKNIYKQLKKIAPTIELKSREATYDETIDSF
TTIAKALNKEDEGKEKLAEHKKVINDLKAELPKDENRNIVLGVARADSFQLHTSSSYDGEIFKMLGFTHAVKSDNAYQEV
SLEQLSKIDPDILFISANEGKTIVDEWKTNPLWKNLKAVKNGQVYDADRDTWTRFRGIKSSETSAKDVLKKVYNK

Specific function: Part of the ABC transporter complex yfmCDEF involved in citrate-dependent Fe(3+) import. Binds citrate-dependent Fe(3+) and delivers it to the surface of yfmDE (Probable)

COG id: COG4594

COG function: function code P; ABC-type Fe3+-citrate transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain

Homologues:

Organism=Escherichia coli, GI87082411, Length=273, Percent_Identity=38.0952380952381, Blast_Score=209, Evalue=2e-55,
Organism=Escherichia coli, GI1786807, Length=299, Percent_Identity=27.0903010033445, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YFMC_BACSU (O34348)

Other databases:

- EMBL:   D86417
- EMBL:   AL009126
- PIR:   B69812
- RefSeq:   NP_388633.1
- ProteinModelPortal:   O34348
- SMR:   O34348
- EnsemblBacteria:   EBBACT00000002893
- GeneID:   936114
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU07520
- NMPDR:   fig|224308.1.peg.752
- GenoList:   BSU07520
- GeneTree:   EBGT00070000032029
- HOGENOM:   HBG692908
- OMA:   QNIDAFK
- PhylomeDB:   O34348
- ProtClustDB:   CLSK2301440
- BioCyc:   BSUB:BSU07520-MONOMER
- InterPro:   IPR002491

Pfam domain/function: PF01497 Peripla_BP_2

EC number: NA

Molecular weight: Translated: 35021; Mature: 35021

Theoretical pI: Translated: 8.19; Mature: 8.19

Prosite motif: PS50983 FE_B12_PBP; PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTYSNKLIAIMSVLLLACLIVSGCSSSQNNNGSGKSESKDSRVIHDEEGKTTVSGTPKR
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCEEECCCCCE
VVVLELSFLDAVHNLGITPVGIADDNKKDMIKKLVGSSIDYTSVGTRSEPNLEVISSLKP
EEEEEHHHHHHHHHCCCCEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCC
DLIIADAERHKNIYKQLKKIAPTIELKSREATYDETIDSFTTIAKALNKEDEGKEKLAEH
CEEEECCHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
KKVINDLKAELPKDENRNIVLGVARADSFQLHTSSSYDGEIFKMLGFTHAVKSDNAYQEV
HHHHHHHHHHCCCCCCCCEEEEEECCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHH
SLEQLSKIDPDILFISANEGKTIVDEWKTNPLWKNLKAVKNGQVYDADRDTWTRFRGIKS
HHHHHHCCCCCEEEEECCCCCEEHHHHCCCHHHHHHHHHCCCCEEECCCHHHHHHCCCCC
SETSAKDVLKKVYNK
CCCHHHHHHHHHHCC
>Mature Secondary Structure
MRTYSNKLIAIMSVLLLACLIVSGCSSSQNNNGSGKSESKDSRVIHDEEGKTTVSGTPKR
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCEEECCCCCE
VVVLELSFLDAVHNLGITPVGIADDNKKDMIKKLVGSSIDYTSVGTRSEPNLEVISSLKP
EEEEEHHHHHHHHHCCCCEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCC
DLIIADAERHKNIYKQLKKIAPTIELKSREATYDETIDSFTTIAKALNKEDEGKEKLAEH
CEEEECCHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
KKVINDLKAELPKDENRNIVLGVARADSFQLHTSSSYDGEIFKMLGFTHAVKSDNAYQEV
HHHHHHHHHHCCCCCCCCEEEEEECCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHH
SLEQLSKIDPDILFISANEGKTIVDEWKTNPLWKNLKAVKNGQVYDADRDTWTRFRGIKS
HHHHHHCCCCCEEEEECCCCCEEHHHHCCCHHHHHHHHHCCCCEEECCCHHHHHHCCCCC
SETSAKDVLKKVYNK
CCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; iron dicitrate [Periplasm]; H2O [C]

Specific reaction: ATP + iron dicitrate [Periplasm] + H2O = ADP + phosphate + iron dicitrate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9272861; 9384377