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The map label for this gene is yfmD

Identifier: 16077818

GI number: 16077818

Start: 824714

End: 825715

Strand: Reverse

Name: yfmD

Synonym: BSU07510

Alternate gene names: 16077818

Gene position: 825715-824714 (Counterclockwise)

Preceding gene: 16077819

Following gene: 16077817

Centisome position: 19.59

GC content: 49.1

Gene sequence:

>1002_bases
TTGTATCATTCAGCCAAACGGCGCTCATCATCAAGACTGATGATGTTTATCATTGCACTGATTATTTTTATATTTGGGCT
TGGGCTGAATCTTTCAGTAGGAGCCTCAGACATCAGCATCATAGATTCATTGAAATATCTTTTTGTATGGGACGGTTCAA
AGGAACAGCTCATCATCTCTACTCTTCGCCTTCCCCGCACATTAATCGGCGTTTTTGTCGGCGCCAGCCTAGCTGTAGCA
GGGGCGCTGATGCAGGCTATGACCAGAAATCCTCTGGCTTCACCCCAAATTTTCGGTGTGAATGCGGGTGCATCGCTTTT
TGTTGTTGCTTCTCTCGTCATTCTGCCGGCATCGCCCTATTCATCTGTTATATTCGCTTTTGCGGGTGCGGCAGCAGGCG
GCGCGATTGTGTATATGATTGCCTCATCCGGCGGAATGACGCCTGTCAAGCTGGCGCTGTCAGGAATGGCCGTGCACTTG
TTCCTCTCCTCTATGACACAGGCCATCATTATTTTAAATGAGTCAGGTGAGGATGTTCTGTACTGGATGACAGGCGCAAT
CGACGGCAGCAACTGGCAGGACGTCATAACCATCGCTCCTTTTTCTGTCATTGGCATCGGGCTTGCCCTCGTATTTTCCG
GTTCTGTTTCTGTTCTCGGTCTCGGAGACGAAACAGCAAAAGGGCTTGGACAAAATATGAACGGCATCAGGATTCTGATC
AGTTTGATTATTTTAATTCTTTCCGGCGCTTCCGTAGCCGTCGCCGGGCCGATTGGCTTTGTCGGGCTGCTCGTCCCGCA
TATTGTCCGCAAGCTGATCGGAGAACATTATCAATACGTGCTTCCGTTTTCGGCACTGTTCGGTGCCATTTTGCTGGTGT
ACGCAGATGTTCTGGCCAGATGGATTGCATTTCCTTATGAATCACCGGTCGGCATTGTCACCGCGATTATCGGAACGCCG
TTTTTCTTATATTTGGCAAGGAAAGGGCGAAACCTGAAATGA

Upstream 100 bases:

>100_bases
ATGTGCTTAAAAAAGTGTATAATAAATAGGACAAATGAGAAGCGAGGGGAATCCTTGCTTCTTCGTTTTTGCAACCAGAC
GCAGTAAGGAAGTGAGACTG

Downstream 100 bases:

>100_bases
AGAAAACAACCAGAAAACAAAAACGCCCCTTACTGGCGATACTCATATTGGCCGTGATTTTAATCGTTCTGTCCGTCATC
AGCATTGGAATCGGTGCATT

Product: iron-dicitrate ABC transporter permease

Products: ADP; phosphate; iron dicitrate [Cytoplasm] [C]

Alternate protein names: Ferric-citrate import system permease protein

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MYHSAKRRSSSRLMMFIIALIIFIFGLGLNLSVGASDISIIDSLKYLFVWDGSKEQLIISTLRLPRTLIGVFVGASLAVA
GALMQAMTRNPLASPQIFGVNAGASLFVVASLVILPASPYSSVIFAFAGAAAGGAIVYMIASSGGMTPVKLALSGMAVHL
FLSSMTQAIIILNESGEDVLYWMTGAIDGSNWQDVITIAPFSVIGIGLALVFSGSVSVLGLGDETAKGLGQNMNGIRILI
SLIILILSGASVAVAGPIGFVGLLVPHIVRKLIGEHYQYVLPFSALFGAILLVYADVLARWIAFPYESPVGIVTAIIGTP
FFLYLARKGRNLK

Sequences:

>Translated_333_residues
MYHSAKRRSSSRLMMFIIALIIFIFGLGLNLSVGASDISIIDSLKYLFVWDGSKEQLIISTLRLPRTLIGVFVGASLAVA
GALMQAMTRNPLASPQIFGVNAGASLFVVASLVILPASPYSSVIFAFAGAAAGGAIVYMIASSGGMTPVKLALSGMAVHL
FLSSMTQAIIILNESGEDVLYWMTGAIDGSNWQDVITIAPFSVIGIGLALVFSGSVSVLGLGDETAKGLGQNMNGIRILI
SLIILILSGASVAVAGPIGFVGLLVPHIVRKLIGEHYQYVLPFSALFGAILLVYADVLARWIAFPYESPVGIVTAIIGTP
FFLYLARKGRNLK
>Mature_333_residues
MYHSAKRRSSSRLMMFIIALIIFIFGLGLNLSVGASDISIIDSLKYLFVWDGSKEQLIISTLRLPRTLIGVFVGASLAVA
GALMQAMTRNPLASPQIFGVNAGASLFVVASLVILPASPYSSVIFAFAGAAAGGAIVYMIASSGGMTPVKLALSGMAVHL
FLSSMTQAIIILNESGEDVLYWMTGAIDGSNWQDVITIAPFSVIGIGLALVFSGSVSVLGLGDETAKGLGQNMNGIRILI
SLIILILSGASVAVAGPIGFVGLLVPHIVRKLIGEHYQYVLPFSALFGAILLVYADVLARWIAFPYESPVGIVTAIIGTP
FFLYLARKGRNLK

Specific function: Part of the ABC transporter complex yfmCDEF involved in citrate-dependent Fe(3+) import. Involved in the translocation of the substrate across the membrane (Probable)

COG id: COG0609

COG function: function code P; ABC-type Fe3+-siderophore transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily

Homologues:

Organism=Escherichia coli, GI1790741, Length=320, Percent_Identity=37.8125, Blast_Score=189, Evalue=3e-49,
Organism=Escherichia coli, GI1790740, Length=281, Percent_Identity=40.9252669039146, Blast_Score=182, Evalue=2e-47,
Organism=Escherichia coli, GI1786805, Length=280, Percent_Identity=37.8571428571429, Blast_Score=146, Evalue=1e-36,
Organism=Escherichia coli, GI1786347, Length=275, Percent_Identity=33.8181818181818, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI1788004, Length=286, Percent_Identity=33.5664335664336, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1786804, Length=272, Percent_Identity=31.9852941176471, Blast_Score=107, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YFMD_BACSU (O34933)

Other databases:

- EMBL:   D86417
- EMBL:   AL009126
- PIR:   C69812
- RefSeq:   NP_388632.1
- HSSP:   P06609
- ProteinModelPortal:   O34933
- SMR:   O34933
- EnsemblBacteria:   EBBACT00000001346
- GeneID:   936110
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU07510
- NMPDR:   fig|224308.1.peg.751
- GenoList:   BSU07510
- GeneTree:   EBGT00070000031853
- HOGENOM:   HBG700016
- OMA:   LVGMAIH
- PhylomeDB:   O34933
- ProtClustDB:   CLSK2301439
- BioCyc:   BSUB:BSU07510-MONOMER
- InterPro:   IPR000522

Pfam domain/function: PF01032 FecCD

EC number: NA

Molecular weight: Translated: 35099; Mature: 35099

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xd315918)-; HASH(0xdafffc8)-; HASH(0xc9062b8)-; HASH(0xddb8b10)-; HASH(0xd14cea8)-; HASH(0xd3d58a0)-; HASH(0xda2d588)-; HASH(0xdaae540)-; HASH(0xd949248)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYHSAKRRSSSRLMMFIIALIIFIFGLGLNLSVGASDISIIDSLKYLFVWDGSKEQLIIS
CCCCHHHCCCCHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHCCEEEEEECCCCCHHHHH
TLRLPRTLIGVFVGASLAVAGALMQAMTRNPLASPQIFGVNAGASLFVVASLVILPASPY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCH
SSVIFAFAGAAAGGAIVYMIASSGGMTPVKLALSGMAVHLFLSSMTQAIIILNESGEDVL
HHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCCEEE
YWMTGAIDGSNWQDVITIAPFSVIGIGLALVFSGSVSVLGLGDETAKGLGQNMNGIRILI
EEEEECCCCCCCCCEEEECCHHHHHHHHHHHHCCCEEEEECCCHHHHHHCCCCCHHHHHH
SLIILILSGASVAVAGPIGFVGLLVPHIVRKLIGEHYQYVLPFSALFGAILLVYADVLAR
HHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WIAFPYESPVGIVTAIIGTPFFLYLARKGRNLK
HHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
>Mature Secondary Structure
MYHSAKRRSSSRLMMFIIALIIFIFGLGLNLSVGASDISIIDSLKYLFVWDGSKEQLIIS
CCCCHHHCCCCHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHCCEEEEEECCCCCHHHHH
TLRLPRTLIGVFVGASLAVAGALMQAMTRNPLASPQIFGVNAGASLFVVASLVILPASPY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCH
SSVIFAFAGAAAGGAIVYMIASSGGMTPVKLALSGMAVHLFLSSMTQAIIILNESGEDVL
HHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCCEEE
YWMTGAIDGSNWQDVITIAPFSVIGIGLALVFSGSVSVLGLGDETAKGLGQNMNGIRILI
EEEEECCCCCCCCCEEEECCHHHHHHHHHHHHCCCEEEEECCCHHHHHHCCCCCHHHHHH
SLIILILSGASVAVAGPIGFVGLLVPHIVRKLIGEHYQYVLPFSALFGAILLVYADVLAR
HHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WIAFPYESPVGIVTAIIGTPFFLYLARKGRNLK
HHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; iron dicitrate [Periplasm]; H2O [C]

Specific reaction: ATP + iron dicitrate [Periplasm] + H2O = ADP + phosphate + iron dicitrate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9272861; 9384377