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The map label for this gene is ydfE

Identifier: 16077605

GI number: 16077605

Start: 585155

End: 585778

Strand: Reverse

Name: ydfE

Synonym: BSU05380

Alternate gene names: 16077605

Gene position: 585778-585155 (Counterclockwise)

Preceding gene: 16077607

Following gene: 16077603

Centisome position: 13.9

GC content: 39.58

Gene sequence:

>624_bases
TTGGACATCAAAAAACAAGACACTCGTCGATTTAAGGAAATCAAACCCAAGATCATGTATTATGGTACCTCGACATTTCT
TCTAACCACATTGAATGAGGATGGAACCACTAATATTAGTCCTATGTCTTCTTCTTGGGCTCTTGGACATTATATAATCC
TTGGAGTAGGACTGGGAGGAAAAGCCATCGACAATTTGGAAAGACACAAAGAGTGTGTCATAAACTTGCCTGGCCCGGAT
TTATGGGAAAACGTTGAAAGAATTTCATCTTATAGCGGAAAAAAGAGTATACCGCCTTTAAAGAAGCAGATCGGATTTAC
ATATAAAAAAGAAAAATACGAGGCAGCAGGGTTAACGCCTTTACAATCAAAAACAGTATCACCAACACGAATTAAAGAAT
GCCCTATCCAAATCGAAGCCGAAGTGAAACACATTCGGCTTCCAGAATATGAATCGTCATTCGCAATTGTAGAGACGCAG
GCACTACATTTTCATGCCGAGGAAAGTATCATTCTGGACGAAAACCATATCAACCCTTCCAAATGGAGCCCGCTTATCTA
TAATTTCAGACACTACTTTGGTTTAGGAAGAGAAGTCGGAAAGACTTTTCGTTCAGAGACATGA

Upstream 100 bases:

>100_bases
TTAGGATTCATGATTTTCCTCCTTACATTCATATTTCGATGATAGTTGAAATGTTAATCCTTTACAATATAAATGTAAGC
GTGACAAGGAGGAAAAAACG

Downstream 100 bases:

>100_bases
TTATTTTAAGACCGAACCATGATTTGGTCTATTCTAGTAACCCTTGTTATTATCAGATCAAGCGATCATTAGGCTTGATC
TCTTTTTTAGTGAAACATCC

Product: flavoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 207

Protein sequence:

>207_residues
MDIKKQDTRRFKEIKPKIMYYGTSTFLLTTLNEDGTTNISPMSSSWALGHYIILGVGLGGKAIDNLERHKECVINLPGPD
LWENVERISSYSGKKSIPPLKKQIGFTYKKEKYEAAGLTPLQSKTVSPTRIKECPIQIEAEVKHIRLPEYESSFAIVETQ
ALHFHAEESIILDENHINPSKWSPLIYNFRHYFGLGREVGKTFRSET

Sequences:

>Translated_207_residues
MDIKKQDTRRFKEIKPKIMYYGTSTFLLTTLNEDGTTNISPMSSSWALGHYIILGVGLGGKAIDNLERHKECVINLPGPD
LWENVERISSYSGKKSIPPLKKQIGFTYKKEKYEAAGLTPLQSKTVSPTRIKECPIQIEAEVKHIRLPEYESSFAIVETQ
ALHFHAEESIILDENHINPSKWSPLIYNFRHYFGLGREVGKTFRSET
>Mature_207_residues
MDIKKQDTRRFKEIKPKIMYYGTSTFLLTTLNEDGTTNISPMSSSWALGHYIILGVGLGGKAIDNLERHKECVINLPGPD
LWENVERISSYSGKKSIPPLKKQIGFTYKKEKYEAAGLTPLQSKTVSPTRIKECPIQIEAEVKHIRLPEYESSFAIVETQ
ALHFHAEESIILDENHINPSKWSPLIYNFRHYFGLGREVGKTFRSET

Specific function: Unknown

COG id: COG1853

COG function: function code R; Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flavoredoxin family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YDFE_BACSU (P96682)

Other databases:

- EMBL:   AB001488
- EMBL:   AL009126
- PIR:   C69780
- RefSeq:   NP_388419.1
- ProteinModelPortal:   P96682
- EnsemblBacteria:   EBBACT00000003922
- GeneID:   939898
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU05380
- NMPDR:   fig|224308.1.peg.538
- GenoList:   BSU05380
- GeneTree:   EBGT00050000006150
- HOGENOM:   HBG324209
- OMA:   IYNFRHY
- ProtClustDB:   CLSK872695
- BioCyc:   BSUB:BSU05380-MONOMER
- InterPro:   IPR002563
- InterPro:   IPR012349
- InterPro:   IPR009002
- Gene3D:   G3DSA:2.30.110.10

Pfam domain/function: PF01613 Flavin_Reduct; SSF50475 FMN_binding

EC number: NA

Molecular weight: Translated: 23630; Mature: 23630

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIKKQDTRRFKEIKPKIMYYGTSTFLLTTLNEDGTTNISPMSSSWALGHYIILGVGLGG
CCCCHHHHHHHHHCCCEEEEEECCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCC
KAIDNLERHKECVINLPGPDLWENVERISSYSGKKSIPPLKKQIGFTYKKEKYEAAGLTP
HHHHHHHHHHHEEEECCCCHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCHHHCCCCC
LQSKTVSPTRIKECPIQIEAEVKHIRLPEYESSFAIVETQALHFHAEESIILDENHINPS
CCCCCCCCCHHHHCCEEEEECEEEEECCCCCCCEEEEEEEEEEEECCCEEEEECCCCCCC
KWSPLIYNFRHYFGLGREVGKTFRSET
CCCHHHHHHHHHHCCCHHHHHHHCCCC
>Mature Secondary Structure
MDIKKQDTRRFKEIKPKIMYYGTSTFLLTTLNEDGTTNISPMSSSWALGHYIILGVGLGG
CCCCHHHHHHHHHCCCEEEEEECCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCC
KAIDNLERHKECVINLPGPDLWENVERISSYSGKKSIPPLKKQIGFTYKKEKYEAAGLTP
HHHHHHHHHHHEEEECCCCHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCHHHCCCCC
LQSKTVSPTRIKECPIQIEAEVKHIRLPEYESSFAIVETQALHFHAEESIILDENHINPS
CCCCCCCCCHHHHCCEEEEECEEEEECCCCCCCEEEEEEEEEEEECCCEEEEECCCCCCC
KWSPLIYNFRHYFGLGREVGKTFRSET
CCCHHHHHHHHHHCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377